View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_18 (Length: 361)
Name: NF13253_high_18
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 48542934 - 48542590
Alignment:
| Q |
1 |
ttgttcaaattgtaagacaagggtacacaacagatgtccaacttgcaggcaagagctaggtgatataaggtgtttagcattggagaaaatagcagaatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48542934 |
ttgttcaaattgtaagacaagggtacacaacagatgtccaacttgcaggcaagagctaggcgatataaggtgtttagcattggagaaaatagcagaatca |
48542835 |
T |
|
| Q |
101 |
cttgaatttccttgtagatacatatctcttggttgttcagagatatttccatattttagcaaactcaaacatgagtctatctgtacctttagaccataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542834 |
cttgaatttccttgtagatacatatctcttggttgttcagagatatttccatattttagcaaactcaaacatgagtctatctgtacctttagaccataca |
48542735 |
T |
|
| Q |
201 |
attgcccttatgctggatcagactgttctgttgttggaaatattccataccttgttgcccatttaagggatgaccatggggttgatatgcattctggatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542734 |
attgcccttatgctggatcagactgttctgttgttggaaatattccataccttgttgcccatttaagggatgaccatggggttgatatgcattctggatg |
48542635 |
T |
|
| Q |
301 |
cacttttaaccatcgttatgtcaaatcaaatcctacggaagtaga |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48542634 |
cacttttaaccatcgttatgtcaaatcaaatcctacggaagtaga |
48542590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 345
Target Start/End: Original strand, 9836277 - 9836620
Alignment:
| Q |
2 |
tgttcaaattgtaagacaagggtacacaacagatgtccaacttgcaggcaagagctaggtgatataaggtgtttagcattggagaaaatagcagaatcac |
101 |
Q |
| |
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| T |
9836277 |
tgttcaacttgtaagactagggtacacaacaggtgcccaacttgcagacaggaactgggcgatattcggtgtttagcattggaaaaaatagcagaatcac |
9836376 |
T |
|
| Q |
102 |
ttgaatttccttgtagatacatatctcttggttgttcagagatatttccatattttagcaaactcaaacatgagtctatctgtacctttagaccatacaa |
201 |
Q |
| |
|
||||| ||||||| ||||||| ||| |||| ||| ||||||||||||| |||| |||||||||||||| |||||||| |||| ||| ||||| || || |
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| T |
9836377 |
ttgaacttccttgcagatacacctctgttggctgtccagagatatttccctattacagcaaactcaaacacgagtctatttgtaacttcagaccttataa |
9836476 |
T |
|
| Q |
202 |
ttgcccttatgctggatcagactgttctgttgttggaaatattccataccttgttgcccatttaagggatgaccatggggttgatatgcattctggatgc |
301 |
Q |
| |
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||||||||||| |||||||||||||||||||| || ||||| || | |||||||| ||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
9836477 |
ctgcccttatgccggatcagactgttctgttgtcggtgatatttcacagcttgttgctcatttaagggacgaccacagagttgatatgcattctggatgc |
9836576 |
T |
|
| Q |
302 |
acttttaaccatcgttatgtcaaatcaaatcctacggaagtaga |
345 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| | ||||||||| |
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|
| T |
9836577 |
acttttaatcatcgttatgtcaagtcaaatcccatggaagtaga |
9836620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 14232530 - 14232564
Alignment:
| Q |
300 |
gcacttttaaccatcgttatgtcaaatcaaatcct |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
14232530 |
gcacttttaaccatcgttatgtcaaatcaaatcct |
14232564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 736518 - 736840
Alignment:
| Q |
11 |
tgtaagacaagggtacacaacagatgtccaacttgcaggcaagagctaggtgatataaggtgtttagcattggagaaaatagcagaatcacttgaatttc |
110 |
Q |
| |
|
||||| |||||||| ||||| ||||||| || || || |||||||| || ||||| |||||| | ||| |||| || | || |||||||| || || | |
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| T |
736518 |
tgtaaaacaagggtgcacaatcgatgtccgacctgtagacaagagcttggagatattaggtgtctggcactggaaaaggttgctgaatcactcgagttac |
736617 |
T |
|
| Q |
111 |
cttgtagatacatatctcttggttgttcagagatatttccatattttagcaaactcaaacatgagtctatctgtacctttagaccatacaattgccctta |
210 |
Q |
| |
|
| || | |||| |||||||| ||| |||| || |||||||| | ||||| || || |||||| | || || | ||||||||||||| ||| ||||| |
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|
| T |
736618 |
catgcaaatactactctcttggatgtccagaaatctttccatactacagcaagctgaagcatgagacaatatgcaattttagaccatacacttgtcctta |
736717 |
T |
|
| Q |
211 |
tgctggatcagactgttctgttgttggaaatattccataccttgttgcccatttaagggatgaccatggggttgatatgcattctggatgcacttttaac |
310 |
Q |
| |
|
|||||||||||| || |||| |||||| ||||| | ||||||||| ||||| ||||| || ||| ||| || ||||| | |||||||| || ||| |
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| T |
736718 |
tgctggatcagagtgctctgctgttggcgatattaatttccttgttgcacatttgagggacgatcataaggtggacatgcacacaggatgcacattcaac |
736817 |
T |
|
| Q |
311 |
catcgttatgtcaaatcaaatcc |
333 |
Q |
| |
|
||||||||||| || |||||||| |
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| T |
736818 |
catcgttatgtgaagtcaaatcc |
736840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 333
Target Start/End: Complemental strand, 41633909 - 41633764
Alignment:
| Q |
188 |
tttagaccatacaattgcccttatgctggatcagactgttctgttgttggaaatattccataccttgttgcccatttaagggatgaccatggggttgata |
287 |
Q |
| |
|
|||||||| || | ||| ||||||||||||||||| ||||| |||||| ||||| | | ||| ||||| ||||| |||||||| ||| ||| || | |
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| T |
41633909 |
tttagaccttatagttgtccttatgctggatcagagtgttccacagttggagatatttccttcctcgttgctcatttgagggatgatcataaggtggaca |
41633810 |
T |
|
| Q |
288 |
tgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcc |
333 |
Q |
| |
|
|||| | |||||||| || |||||||||||||| || |||||||| |
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|
| T |
41633809 |
tgcacaccggatgcacattcaaccatcgttatgtgaagtcaaatcc |
41633764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 5037448 - 5037395
Alignment:
| Q |
281 |
gttgatatgcattctggatgcacttttaaccatcgttatgtcaaatcaaatcct |
334 |
Q |
| |
|
||||| |||||| ||| ||||||||||| |||||||| ||||||||||||||| |
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|
| T |
5037448 |
gttgacatgcatagtggctgcacttttaatcatcgttacgtcaaatcaaatcct |
5037395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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