View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_28 (Length: 301)
Name: NF13253_high_28
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 40803118 - 40803401
Alignment:
| Q |
18 |
ccaaagcatgaaataacgatatacggaaattggatttagctcaaagaatataaccaaaatcttaccgctatgcacttcatcatggtgttcagacaatcgc |
117 |
Q |
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| T |
40803118 |
ccaaagcatgaaataacgatatacggaaattggatttagctcaaagaatataaccaaaatcttaccgctatgcacttcatcatggtgttcagacaatcgc |
40803217 |
T |
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| Q |
118 |
tgtttgaagtcactgcatcaaaagttgaagaagtcaccggttagaaaacttgcagcaagcacaaaaaagcattaatgtcaacattttccccgtattttcc |
217 |
Q |
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| T |
40803218 |
tgtttgaagtcactgcatcaaaagttgaagaagtcaccggttagaaaacttgcagcaagcacaaaaaagcattaatgtcaacattttccccgtattttcc |
40803317 |
T |
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| Q |
218 |
atgtcatgttccccctttacaccattcatcaatttcaagtttccataggtaaaagatactaaaaaataagatgttgcatgatat |
301 |
Q |
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| T |
40803318 |
atgtcatgttccccctttacaccattcatcaatttcaagtttccataggtaaaagatactaaaaaataagatgttgcatgatat |
40803401 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 4642531 - 4642492
Alignment:
| Q |
67 |
ataaccaaaatcttaccgctatgcacttcatcatggtgtt |
106 |
Q |
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| T |
4642531 |
ataaccaaaatcttaccgcgatgcacttcatcattgtgtt |
4642492 |
T |
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