View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_35 (Length: 259)
Name: NF13253_high_35
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 8397944 - 8398154
Alignment:
| Q |
28 |
aattgaataaaaagatctgccgcaacatatggaactgccgaggaaaatccaagccaactaaaaatatgatgccaaacagccctaaatgcaggacaatgta |
127 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
8397944 |
aattgaataaaaagatccgccgcaacatatggaactgccgaggaaaatccaagccaactaaaaatatgatgccaaacagccccaaaagcaggacaatgta |
8398043 |
T |
|
| Q |
128 |
aaaacaaattattatgagtttccaaagatccacaccgaccaacacataagcttgaatcgttatttaaaatgttacgcctgattaaattatccctcgtaag |
227 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
8398044 |
aaaacaaattatcatgagtttccaaagatccacaccgaccaacacataagcttgaatcgttatttaaaatgctacgcctgattaaattatccctcgtagg |
8398143 |
T |
|
| Q |
228 |
tatttggactt |
238 |
Q |
| |
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||||||||||| |
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| T |
8398144 |
tatttggactt |
8398154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 51800379 - 51800273
Alignment:
| Q |
70 |
gaaaatccaagccaactaaaaatatgatgccaaacagccctaaatgcaggacaatgtaaaaacaaattattatgagtttccaaagatccacaccgaccaa |
169 |
Q |
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|||| ||||||||||| | ||||||| | |||||| |||| ||| ||| ||||| | ||| || | |||| ||||||||| ||||||||||||||||| |
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| T |
51800379 |
gaaattccaagccaacaataaatatggtaccaaaccgccccaaaaacagagcaatgaagaaataagtgattaagagtttccacagatccacaccgaccaa |
51800280 |
T |
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| Q |
170 |
cacataa |
176 |
Q |
| |
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||||||| |
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| T |
51800279 |
cacataa |
51800273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 31124088 - 31123945
Alignment:
| Q |
74 |
atccaagccaactaaaaatatgatgccaaacagccctaaatgcaggacaatgtaaaaacaaattattatgagtttccaaagatccacaccgaccaacaca |
173 |
Q |
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|||||||||||| ||||||||||| ||||||||||| ||| | || ||||||||||||||||| |||| |||||||||||||||| ||||||||| |||| |
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| T |
31124088 |
atccaagccaaccaaaaatatgattccaaacagccccaaaagtagaacaatgtaaaaacaaatgattaagagtttccaaagatccgcaccgaccagcaca |
31123989 |
T |
|
| Q |
174 |
taagcttgaatcgttatttaaaatgttacgcctgattaaattat |
217 |
Q |
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||| ||||| |||||||||| |||||||||||| |||||||||| |
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| T |
31123988 |
taaacttgagtcgttatttataatgttacgccttattaaattat |
31123945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 11453116 - 11453252
Alignment:
| Q |
74 |
atccaagccaactaaaaatatgatgccaaacagccctaaatgcaggacaatgtaaaaacaaattattatgagtttccaaagatccacaccgaccaacaca |
173 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||| | | |||||||||||| |||| |||| |||||||| |||||| |||||| || ||| |
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| T |
11453116 |
atccaagccaatcgaaaatatgattccaaacagccccaaaagtataacaatgtaaaaataaatgattaagagtttccggagatccgcaccgatcagtaca |
11453215 |
T |
|
| Q |
174 |
taagcttgaatcgttatttaaaatgttacgcctgatt |
210 |
Q |
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||| ||||| || |||||||||||||||||||||||| |
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| T |
11453216 |
taaacttgagtcattatttaaaatgttacgcctgatt |
11453252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 35503804 - 35503660
Alignment:
| Q |
22 |
tagctaaattgaataaaaagatctgccgcaacatatggaactgccgaggaaaatccaagccaactaaaaatatgatgccaaacagccctaaatgcaggac |
121 |
Q |
| |
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||||| ||||||||||| |||| || || |||||||| || ||| |||| |||||| ||| | | |||| || ||||||||| | ||| | || || |
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| T |
35503804 |
tagctgaattgaataaagtgatccgctacagcatatggagttgtcgacgaaataccaagcaaaccatagatataataccaaacagctccaaaagtagaac |
35503705 |
T |
|
| Q |
122 |
aatgtaaaaacaaattattatgagtttccaaagatccacaccgac |
166 |
Q |
| |
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|||||||||| ||||||||||| ||||||||| |||||||||||| |
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|
| T |
35503704 |
aatgtaaaaataaattattatgggtttccaaaaatccacaccgac |
35503660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 31050497 - 31050370
Alignment:
| Q |
74 |
atccaagccaactaaaaatatgatgccaaacagccctaaatgcaggacaatgtaaaaaca----aattattatgagtttccaaagatccacaccgaccaa |
169 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||| ||| | || ||| |||||||| | ||| |||| ||||||| ||||||| ||||||||| |
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| T |
31050497 |
atccaaaccaatcaaaaatatgattccaaacagccccaaaagtagaacagtgtaaaaaaataaaaatgattaagagtttctgaagatccgcaccgaccag |
31050398 |
T |
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| Q |
170 |
cacataagcttgaatcgttatttaaaat |
197 |
Q |
| |
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|||||| ||||| || ||||||||||| |
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|
| T |
31050397 |
tacataaacttgagtcattatttaaaat |
31050370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 13880500 - 13880428
Alignment:
| Q |
124 |
tgtaaaaacaaattattatgagtttccaaagatccacaccgaccaacacataagcttgaatcgttatttaaaa |
196 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||| |||| | || ||||| |||||||||| |
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| T |
13880500 |
tgtaaaaacaaatgattagaggtttccaaagatccacaccgaccagcacacatgcaagaatcattatttaaaa |
13880428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 14020625 - 14020553
Alignment:
| Q |
124 |
tgtaaaaacaaattattatgagtttccaaagatccacaccgaccaacacataagcttgaatcgttatttaaaa |
196 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||| |||| | || ||||| |||||||||| |
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| T |
14020625 |
tgtaaaaacaaatgattagaggtttccaaagatccacaccgaccagcacacatgcaagaatcattatttaaaa |
14020553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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