View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_36 (Length: 257)
Name: NF13253_high_36
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 28932660 - 28932881
Alignment:
| Q |
17 |
ttaggtgaaagttgggataggaaagcaggactcttcaggatcaactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcaccc |
116 |
Q |
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| T |
28932660 |
ttaggtgaaagttgggataggaaagcaggactcttcaggatcaactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcaccc |
28932759 |
T |
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| Q |
117 |
gaggaagagaaaaaccaggaatttgcatctggtaatacttcagagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28932760 |
gaggaagagaaaaaccaggaatttgcatctggtaatacttcagagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttcct |
28932859 |
T |
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| Q |
217 |
tccaaaaattaaaggatgcaaa |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
28932860 |
tccaaaaattaaaggatgcaaa |
28932881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 10186967 - 10187147
Alignment:
| Q |
58 |
caactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcacccgaggaagagaaaaaccaggaatttgcatctggtaatacttc |
157 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| | | ||||| ||| |||| |
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| T |
10186967 |
caactgatttttcaacaaaacagaatgctgatgcaaagcaaggaagtcagaaatcacctgaggaagagaaaaacgaggaatctccgtctggcaatgcttc |
10187066 |
T |
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| Q |
158 |
agagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttccttccaaaaattaaaggatgcaaa |
238 |
Q |
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| T |
10187067 |
agaatcattgtttggcaaatttaagtcaaccttttcgtcaccaatggtttctacttccttccaaaaattaaaggatgcaaa |
10187147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 35121399 - 35121178
Alignment:
| Q |
17 |
ttaggtgaaagttgggataggaaagcaggactcttcaggatcaactgattcttcaacaaaactggatgctgatgcaaagcaaggaagtcagacatcaccc |
116 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
35121399 |
ttaggtgaaagctgggataggaaagcaggactcttcaggatcaacagattcttcaacaaaacaggatgcggatgcaaagcaaggaagacagacatcaccc |
35121300 |
T |
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| Q |
117 |
gaggaagagaaaaaccaggaatttgcatctggtaatacttcagagtcaatgtttggcaaatttaagtcaaccttttcatcaccaaatgtttctacttcct |
216 |
Q |
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|||||||||||||||||||||| ||| ||||| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
35121299 |
gaggaagagaaaaaccaggaatctgcttctggcaatgcttcagagtcattgtttggaaaatttaagtcaaccttttcgtcaccaaaagtttctacttcct |
35121200 |
T |
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| Q |
217 |
tccaaaaattaaaggatgcaaa |
238 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
35121199 |
tccaaaaattaaaggatgcaaa |
35121178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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