View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_4 (Length: 617)
Name: NF13253_high_4
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 16 - 610
Target Start/End: Complemental strand, 54881386 - 54880801
Alignment:
| Q |
16 |
caagaagaacttgcattttcattggaaactgatgttggtattatgtttgcttttgatctactagagtagtttcttgcttcagagaaaatactggtggatg |
115 |
Q |
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| T |
54881386 |
caagaagaacttgcattttcattggaaactgatgttggtattatgtttgcttttgatctactagagtagtttcttgcttcagagacaatactggtggatg |
54881287 |
T |
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| Q |
116 |
atgaatctgggtctaaagaattggttgaaagcttaacaccagagagaagaaacctgttatgtttctgtgtatgttcatttgctccatggattggaaggtc |
215 |
Q |
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| T |
54881286 |
atgaatctgggtctaaagaattgcttgaaagcttaacaccagagagaagaaacctgttatgtttctgtgtatgttgatttgctccatggattggaaggtc |
54881187 |
T |
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| Q |
216 |
acattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaacnnnnnnncgcacgatattatttattattaattaatt |
315 |
Q |
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| T |
54881186 |
acattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaacaaaaaa-cgcaagatattatt--------attaatt |
54881096 |
T |
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| Q |
316 |
aaagaccattttaaaacgtggttagagttgtggttgcattagtgacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtat |
415 |
Q |
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| T |
54881095 |
aaagaccattttaaaacgtggttagagttgtggttgaattagtcacatctgactcatgagattctttaaaatattaaaagatccagatgcgacggtgtat |
54880996 |
T |
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| Q |
416 |
tcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatg |
515 |
Q |
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| T |
54880995 |
tcatacttgacagatatcacaaagagggtagtctttggagttgaggtgaacaagagaaaaacgagtgtgtttggttgcgagcttgttggcacggtggatg |
54880896 |
T |
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| Q |
516 |
gtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtagcctcagctttctcacacacatcacattggatcttcatctc |
610 |
Q |
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| T |
54880895 |
gtatgatcacatccatggcaaagagcagcttcatctgaaggacagaacatagtagcctcagctttctcacacacatcacattggatcttcatctc |
54880801 |
T |
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Back To:
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 26846622 - 26846544
Alignment:
| Q |
200 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaa |
278 |
Q |
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| T |
26846622 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaa |
26846544 |
T |
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