View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_46 (Length: 234)
Name: NF13253_high_46
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 37304999 - 37304942
Alignment:
| Q |
15 |
aagaagaaacgttatcaccgtcatacacagcatcagatccaagaaatggaagcgtaag |
72 |
Q |
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| T |
37304999 |
aagaagaaacgttatcaccgtcatacacagcatcagatccaagaaatggaagcgtaag |
37304942 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 37304826 - 37304797
Alignment:
| Q |
188 |
ggaatgtccacaccctgatgacaagcaaag |
217 |
Q |
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| T |
37304826 |
ggaatgtccacaccctgatgacaagcaaag |
37304797 |
T |
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