View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_47 (Length: 232)
Name: NF13253_high_47
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 33353903 - 33353708
Alignment:
| Q |
20 |
gttagcaacatgttcttcttgacaactcttccaataacatgtgctcataaattaaggggttagtgtttctttggttaataatcagtttgctaggagtgtg |
119 |
Q |
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| T |
33353903 |
gttagcaacatgttcttcatgacatctcttccaataacatatgctcataaattaaggggttaatgtttctttggttaataatcagtttgttaggagtgtg |
33353804 |
T |
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| Q |
120 |
tcttaaaaaattaaacactctcttaccaacattaaggtcatgaaaca---tcatcatatccttaagtttgaaagccattatcagataaaacccaat |
212 |
Q |
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| T |
33353803 |
tcttaaaaaattaaacactctcttaccagcattaaggtcatgaaacatcttcatcatatccttaagtttgaaagccattatcagataaaacccaat |
33353708 |
T |
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