View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_high_5 (Length: 613)
Name: NF13253_high_5
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 45407707 - 45407130
Alignment:
| Q |
1 |
cacagattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacacttataataagacattcatgttacgattactgcaatgaacatg |
100 |
Q |
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| T |
45407707 |
cacagattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacacttataataagacattcatgttacgattactgcaatgaacatg |
45407608 |
T |
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| Q |
101 |
gccggctttgatctaattaggaaaaatatgccggcatatcttcttgatctatatatggttttgcttcaatcctcctt-cacaatgcttcttgcgtgctgg |
199 |
Q |
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| T |
45407607 |
gccggctttgatctaattaggaaaaatatgccggcatatcttcttgatctatatatggttttgcttcaatcctactttcataaagcttcttgcgtgctgg |
45407508 |
T |
|
| Q |
200 |
cacatgtatactttgataatctagagttcggttaaaagataaataaaaagttggtagaaaatcatttccattaaagattcatctctaaatattttaaatt |
299 |
Q |
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| T |
45407507 |
c-----------ttgataatttagagttcggttaaaagataaataaaaagttggtagaaaatcatttccattaaagattcatctcaaaatatt------- |
45407426 |
T |
|
| Q |
300 |
aatcgtaacttattaaccatttaagtttaattgttagagaagtcatacatttatcgaacacgaagtcatggattttgatgcattgcactatggtcatgat |
399 |
Q |
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| T |
45407425 |
aatcgtaacttattaaccacttaagtttaattgttagagaagtcatacatttatcaaacacgaagtcataaattttgatgcattgcactatggtcatgat |
45407326 |
T |
|
| Q |
400 |
taaataaaccagtcacacgagtcacgacgctagacagcttgtattaattgtttattattggtgtatttggtgatggctgatatctaagacaatactttaa |
499 |
Q |
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| T |
45407325 |
taaataaaccagtcacacgagtcacgacgctagacagcttgtattaattgtttattattggtgtatttggtgatggctgatatctaagacaatactttaa |
45407226 |
T |
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| Q |
500 |
agttgttaagctattaatcatattgctgcaactgattttgtatataatcgtaccttgtgaatgataggtgctgtactggtacattatacatgtagt |
595 |
Q |
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| T |
45407225 |
agttgttaagctattaatcatattgctgcaactgattttgtatataatcgtaccttgtgaatgataggtgctatactggtacattatacatgtagt |
45407130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 327 - 565
Target Start/End: Complemental strand, 10922524 - 10922292
Alignment:
| Q |
327 |
taattgttagagaagtcatacatttatcgaacacgaagtcatggattttgatgcattgcactatggtcatgattaaataaaccagtcacacgagtcacga |
426 |
Q |
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|||||| ||||| ||| ||||||||||| |||| |||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
10922524 |
taattgctagaggagttatacatttatctaacatgaagtcgtgaattttgatgcaatgcactatggtcat---taaataaaccagtcacacga------- |
10922435 |
T |
|
| Q |
427 |
cgctagacagcttgta--ttaattgtttattattggtgtatttggtgatggctgatatctaagacaatactttaaagttgttaagctattaatcatattg |
524 |
Q |
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| T |
10922434 |
cgctagacagcttgtaaattaattgtttattcttggtgaatttggtgatgcctaatatctaagacaatactttaaagttgttaagccgttaatcatattg |
10922335 |
T |
|
| Q |
525 |
ctgcaactgattttgta--tataatcgtaccttgtgaatgata |
565 |
Q |
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| T |
10922334 |
ctgcaactgattttgtatatatactcgtaccttgtgaatgata |
10922292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 10922747 - 10922601
Alignment:
| Q |
5 |
gattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacac-----------ttataataagacattcatgttacgattactgcaat |
93 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
10922747 |
gattaagtgaagtaattacggagaggttgctgtatggagtcataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaat |
10922648 |
T |
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| Q |
94 |
gaacatggccggctttgatctaattaggaaaaatatgccggcatatct |
141 |
Q |
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| T |
10922647 |
gaacgtggccggctttgatttaacgaggaaaaa-atgcccgcatatct |
10922601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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