View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_10 (Length: 534)
Name: NF13253_low_10
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 50122282 - 50122809
Alignment:
| Q |
16 |
acatacatgtaaaagtgttaaaaatttcacgttgaatgtgatatatatctcacgttacatataagtcatgtagaacttatttaagttcaattcaaattct |
115 |
Q |
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| T |
50122282 |
acatacatgtaaa-gtgttaaaaatttcacattgaatgtgatatatatctcacgttacgtataagtcatgtagaacttatt-aagttcaattcaaattct |
50122379 |
T |
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| Q |
116 |
aaaatagatcaattagaatatgtgggtgcataatatatgctactacgtgcgatttagactatgtttgtactttctgtaatcacattttggtttgtcaaat |
215 |
Q |
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| T |
50122380 |
aaaatagatcaattagaatatgtgggtgcataatatatgctactacgtgcgatttagactatgtttgtactttctgtaatcacattttggtttgtcaaat |
50122479 |
T |
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| Q |
216 |
gtgattagaccataaattgttatgtttggattttagaattgattcc--------------------ctaaaagttcatatttctattttctctcgcaaca |
295 |
Q |
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| T |
50122480 |
gtgattagaccataaattattatgtttggactttagaattgattccagtcttaagatcaattctacctaaaagttcatatttctattttctctcgcaaca |
50122579 |
T |
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| Q |
296 |
tagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtgcaaatttattc |
395 |
Q |
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| T |
50122580 |
tagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtgcaaatttattc |
50122679 |
T |
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| Q |
396 |
aaatataaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaagcgtaaaagag |
495 |
Q |
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| T |
50122680 |
aaa-attaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaagcttaaaagag |
50122778 |
T |
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| Q |
496 |
gaatgtccacgccataaatattgttcttctc |
526 |
Q |
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| T |
50122779 |
gaatgtccacgccataaatattgttcttctc |
50122809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 11458923 - 11458979
Alignment:
| Q |
193 |
aatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggatttt |
249 |
Q |
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| T |
11458923 |
aatcacattttggttaatcaaacgtgatttgaccataaattgttacgtttggctttt |
11458979 |
T |
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