View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_12 (Length: 486)
Name: NF13253_low_12
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 32686338 - 32685869
Alignment:
| Q |
1 |
ttgaaggacgcttccaatattatcatatgtgcttctattcacaatgtatgttttttcaagaagtcaaattcaggnnnnnnnnntaccaagttcaaaatcc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32686338 |
ttgaaggacgcttccaatattattatatgtgcttctattcacaatgtatgttttttcaagaagtcaaattcaggaaaaaaaa-taccaagttcaaaatcc |
32686240 |
T |
|
| Q |
101 |
atctaggttcacacaaccaaaccctaagacgattgatcagtcttttgtggtagattattgtatatatatgacttgggttattactttgataaagacttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32686239 |
atctaggttcacacaaccaaaccctaagacgattgatcagtcttttgtggtagattattgtatatatatgacttgggttattactttgataaagacttgg |
32686140 |
T |
|
| Q |
201 |
aattatgttgcaaaaatcttcaaacatatctaaaacatgatatcagagagattttattagttctatcgaaatcaagttttatgatgaaatttagattttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32686139 |
aattatgttgcaaaaatcttcaaacatatctaaaacatgatatcagagagattttattagttctatcgaaatcaagctttatgatgaaatttagattttt |
32686040 |
T |
|
| Q |
301 |
gaagacatataattgtgtttcttactacatgaaaaagttatcagccaacattaactatttatannnnnnnnnaaaattatgagataattgttcccttact |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32686039 |
gaagacatataattgtgtttcttactacatgaaaaagttatcagccaacattaactatttatatttttttttttaattatgagataattgttcccttact |
32685940 |
T |
|
| Q |
401 |
tcaaatagnnnnnnntaaataaaatcttaggggtcctattaggaattgtcaaatatatttgttgtttttta |
471 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
32685939 |
tcaaatagaaaaaaataaataaaatcttaggggtcctattaagaatcgtcaaatatatttgttgtttttta |
32685869 |
T |
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Back To:
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 6397543 - 6397589
Alignment:
| Q |
194 |
gacttggaattatgttgcaaaaatcttcaaacatatctaaaacatga |
240 |
Q |
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|||||| ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
6397543 |
gacttgaaattatgttacaaaaatctttaaacatatctaaaacatga |
6397589 |
T |
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