View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_14 (Length: 442)
Name: NF13253_low_14
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 6733524 - 6733937
Alignment:
| Q |
8 |
gtcgaagaatatggaaccacctatcgcaaggtaacttagaatttttgttttgatcctctttgnnnnnnnn-gttacttgctcaatatgcctataactatc |
106 |
Q |
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| T |
6733524 |
gtcgaagaagatggaaccacctatcgcaaggtaacttagaatttttgttttgctcctctttgtttttttttgttacttgctcaatatgcctataactatc |
6733623 |
T |
|
| Q |
107 |
catttatactacattattgttgttctaacttaattatctgatcttttggttacactttaattacgtgaatccgatacttttcatatgtaattagatctag |
206 |
Q |
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| T |
6733624 |
catttatactacattattgttgttctaacttaattatctgatcttttggttacactttaattatgtgaatccgatacttttcatatgtaattagatctag |
6733723 |
T |
|
| Q |
207 |
agaagaaaaatgaaaatcatgtgtaaccaaaagatgttatttctcaggttatgaaaaatgaaaatctgacactttatgattttagtatcannnnnnngac |
306 |
Q |
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| T |
6733724 |
agaagaaaaatgaaaatcatgtgtaaccaaaagatgttatttctcagattatgaaaaatgaaaatctgacactttatgattttagtatcatttttttgac |
6733823 |
T |
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| Q |
307 |
aaatgattttagtatcataaaattgaccttgatgcatgcttgtgcaattaacttccatgaagaaaatcaattggtatgttagtattttcttatttatcat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6733824 |
aaatgattttagtatcataaaattgaccttgatgcatgcttgtgcaattaacttccatgaagaaaatcaattggtatgttagtattttcttatttatcat |
6733923 |
T |
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| Q |
407 |
tgttcgaatcatag |
420 |
Q |
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| T |
6733924 |
tgttcgaattatag |
6733937 |
T |
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