View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_15 (Length: 426)
Name: NF13253_low_15
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 834941 - 835373
Alignment:
| Q |
1 |
tagtgcacttatttgtatattgttgttatcatgctaaactaagaactaatgccaaaattagcacactttttcaggatacagactgtggaattagatgtgt |
100 |
Q |
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| T |
834941 |
tagtgcacctttttgtatattgttgttatcatgctaaactaagaactaatgccaaaattagcacactttttcag-atacaaactgtggaattagatatgt |
835039 |
T |
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| Q |
101 |
tttgannnnnnn--ataatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactnnnnnnntagannnnnnnc |
198 |
Q |
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| T |
835040 |
tttgatttctttttataatgtgcatatatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatactaaaaaaatagatttttttc |
835139 |
T |
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| Q |
199 |
tccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgtt |
298 |
Q |
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| T |
835140 |
tccttttgtgacttgccataatttcaaattggttgattctggatatatgagttcttttttcataactttagatatacaatagaacttctcttggaatgtt |
835239 |
T |
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| Q |
299 |
ctgcacaatgattggtattgatacctagca----------------taacaaatagtactattagtaatatattgctcctctcaatcactaatacatgga |
382 |
Q |
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| T |
835240 |
ctgcacaatgattggtattgatacctagcatacctaaagtcttttctaacaaatagtactgttagtaatatattgctcctctcaatcactaatacatgga |
835339 |
T |
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| Q |
383 |
atgaatttgtaattcttacatctactggcctttg |
416 |
Q |
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| T |
835340 |
atgaatttgtaattcttacatctactggcctttg |
835373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 813248 - 813338
Alignment:
| Q |
16 |
tatattgttgttatcatgctaaactaagaactaatgccaaaattagcacac-tttttcaggatacagactgtggaattagatgtgttttga |
105 |
Q |
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| T |
813248 |
tatattgttgttatcatgctaaactcagaactaatactaaaattagcatactttttttaggatacaaaatgtggaattagatgtgttttga |
813338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 813443 - 813547
Alignment:
| Q |
211 |
ttgccataatttcaaattggttgattctggatatatgagttcttt-tttcataactttagatatacaatagaacttctcttggaatgttctgcacaatga |
309 |
Q |
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| T |
813443 |
ttgcaatagtttcaaattggttgattctggatacatcacttctttctttcataacgtta--tatacactagatcctctctaggaatgttctgcacaataa |
813540 |
T |
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| Q |
310 |
ttggtat |
316 |
Q |
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| T |
813541 |
ttggtat |
813547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 813597 - 813628
Alignment:
| Q |
376 |
acatggaatgaatttgtaattcttacatctac |
407 |
Q |
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| T |
813597 |
acatggaatgaatttgtaattcttacatctac |
813628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 813350 - 813403
Alignment:
| Q |
125 |
tatgccaatactgggattcaatgtaaaccccgtggtaccaagttcgattcatact |
179 |
Q |
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| T |
813350 |
tatgccaagattgggattcaatgtaaactc-gtggtgccaagttcgattcatact |
813403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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