View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13253_low_22 (Length: 346)

Name: NF13253_low_22
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13253_low_22
NF13253_low_22
[»] chr2 (10 HSPs)
chr2 (10-330)||(37912953-37913274)
chr2 (138-266)||(19889717-19889846)
chr2 (138-266)||(23788419-23788546)
chr2 (138-263)||(21646493-21646618)
chr2 (162-266)||(23760606-23760709)
chr2 (160-245)||(4141634-4141718)
chr2 (138-266)||(32345451-32345578)
chr2 (161-265)||(13717172-13717276)
chr2 (215-264)||(4978767-4978816)
chr2 (215-264)||(4996675-4996724)
[»] chr7 (13 HSPs)
chr7 (138-266)||(45907047-45907175)
chr7 (184-266)||(41434719-41434801)
chr7 (183-266)||(22035749-22035833)
chr7 (183-266)||(8117457-8117540)
chr7 (166-265)||(21798798-21798896)
chr7 (169-266)||(16861680-16861777)
chr7 (165-262)||(16979940-16980038)
chr7 (165-266)||(36636020-36636122)
chr7 (182-254)||(11740386-11740458)
chr7 (187-266)||(18037863-18037942)
chr7 (164-266)||(33194719-33194822)
chr7 (184-254)||(30774943-30775013)
chr7 (187-265)||(28004195-28004272)
[»] chr8 (19 HSPs)
chr8 (165-266)||(39065547-39065648)
chr8 (165-265)||(41675685-41675785)
chr8 (169-262)||(39534155-39534248)
chr8 (184-257)||(37919417-37919490)
chr8 (169-265)||(29795508-29795604)
chr8 (184-263)||(20821908-20821987)
chr8 (184-266)||(14110627-14110708)
chr8 (165-266)||(28462556-28462657)
chr8 (184-266)||(900246-900329)
chr8 (165-266)||(39209376-39209476)
chr8 (168-265)||(30924834-30924932)
chr8 (164-265)||(43917584-43917686)
chr8 (192-266)||(34678220-34678294)
chr8 (200-257)||(36861155-36861212)
chr8 (184-266)||(23797506-23797588)
chr8 (165-219)||(38362264-38362318)
chr8 (215-265)||(44648952-44649002)
chr8 (226-266)||(33945001-33945041)
chr8 (212-264)||(42654633-42654685)
[»] chr5 (12 HSPs)
chr5 (165-266)||(14863335-14863436)
chr5 (138-262)||(7609557-7609681)
chr5 (165-251)||(21052656-21052742)
chr5 (159-259)||(2611169-2611269)
chr5 (138-245)||(11320098-11320204)
chr5 (161-266)||(35185251-35185356)
chr5 (186-265)||(12187203-12187282)
chr5 (162-249)||(22180286-22180372)
chr5 (165-266)||(31619318-31619418)
chr5 (161-266)||(16802022-16802127)
chr5 (184-265)||(11815929-11816010)
chr5 (161-262)||(16611503-16611603)
[»] chr4 (10 HSPs)
chr4 (138-262)||(19147165-19147289)
chr4 (162-266)||(31647717-31647821)
chr4 (169-266)||(38320131-38320229)
chr4 (186-266)||(31241964-31242045)
chr4 (138-266)||(47397577-47397705)
chr4 (167-265)||(54248982-54249080)
chr4 (165-246)||(3319283-3319364)
chr4 (214-266)||(38319553-38319606)
chr4 (212-266)||(20542608-20542662)
chr4 (187-265)||(16341116-16341194)
[»] chr3 (19 HSPs)
chr3 (160-266)||(44291243-44291349)
chr3 (165-266)||(15671130-15671231)
chr3 (138-259)||(43862913-43863034)
chr3 (183-264)||(42163621-42163703)
chr3 (165-266)||(27143998-27144100)
chr3 (163-264)||(32720535-32720637)
chr3 (173-266)||(35322016-35322107)
chr3 (195-266)||(44041337-44041409)
chr3 (184-266)||(17109547-17109630)
chr3 (191-266)||(23208157-23208230)
chr3 (215-265)||(6785808-6785858)
chr3 (184-266)||(36258695-36258779)
chr3 (182-229)||(17560724-17560771)
chr3 (192-266)||(49419064-49419139)
chr3 (191-266)||(49710970-49711044)
chr3 (188-246)||(47877311-47877369)
chr3 (165-266)||(52992443-52992544)
chr3 (184-265)||(4020116-4020197)
chr3 (163-266)||(28709579-28709683)
[»] scaffold0117 (1 HSPs)
scaffold0117 (159-266)||(16843-16950)
[»] chr1 (20 HSPs)
chr1 (160-267)||(50127360-50127467)
chr1 (165-266)||(30627628-30627730)
chr1 (165-266)||(40391230-40391332)
chr1 (138-266)||(26855839-26855967)
chr1 (165-266)||(31884473-31884574)
chr1 (191-266)||(48282904-48282979)
chr1 (184-266)||(19066878-19066960)
chr1 (184-266)||(19114768-19114850)
chr1 (138-266)||(15419663-15419792)
chr1 (164-245)||(50468841-50468922)
chr1 (183-266)||(44109083-44109167)
chr1 (138-266)||(33827837-33827966)
chr1 (138-266)||(33839999-33840128)
chr1 (165-230)||(27742552-27742617)
chr1 (184-264)||(13534512-13534592)
chr1 (198-266)||(20471345-20471413)
chr1 (198-266)||(20560124-20560192)
chr1 (163-265)||(13969113-13969216)
chr1 (165-215)||(16963639-16963689)
chr1 (161-265)||(46295885-46295990)
[»] scaffold0886 (1 HSPs)
scaffold0886 (141-266)||(1118-1243)
[»] scaffold0034 (1 HSPs)
scaffold0034 (165-266)||(22437-22538)
[»] scaffold0006 (1 HSPs)
scaffold0006 (165-266)||(38800-38901)
[»] chr6 (7 HSPs)
chr6 (138-266)||(17506236-17506366)
chr6 (168-266)||(4803157-4803256)
chr6 (191-266)||(21809819-21809894)
chr6 (141-254)||(19418569-19418683)
chr6 (165-261)||(10008191-10008288)
chr6 (139-253)||(10252938-10253053)
chr6 (184-256)||(18493261-18493333)
[»] scaffold0078 (1 HSPs)
scaffold0078 (138-266)||(874-1003)
[»] scaffold0068 (1 HSPs)
scaffold0068 (184-266)||(52030-52112)
[»] scaffold1372 (2 HSPs)
scaffold1372 (220-266)||(1284-1330)
scaffold1372 (182-231)||(1330-1379)
[»] scaffold0204 (1 HSPs)
scaffold0204 (138-266)||(15379-15508)
[»] scaffold0079 (1 HSPs)
scaffold0079 (187-265)||(51667-51745)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 37913274 - 37912953
Alignment:
Q  10 ataatactagacttaacgaggggattagtgatcaggttgatgaggaggatgacaatagtgctaatgactatatctagtttgaagatgaggatattgatag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37913274 ataatactagacttaacgaggggattagtgatcaggttgatgaggaggatgacaatagtgctaatgactatatctagtttgaagatgaggatattgatag 37913175  T
Q  110 tatttgaaagaaataagtaannnnnnnng-agaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaat 208  Q
    ||||||||||||||||||||        | ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  37913174 tatttgaaagaaataagtaattttttttggagaatgttaacccgtgtttctggggtattggttaagcatcaaaagaagtaagtttttattaaaaattaat 37913075  T
Q  209 gtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatttacagaaattctaatcattgttatggaatgatgacagtgatcat 308  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37913074 gtgattattacttgataaaaagtgacggtttatattttcaagataaaaattctatttacagaaattctaatcattgttatggaatgatgacagtgatcat 37912975  T
Q  309 ggccatatgtccttcttagtaa 330  Q
    |||| |||||||||||||||||    
T  37912974 ggccttatgtccttcttagtaa 37912953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 19889717 - 19889846
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||| | |||  || |||| ||||||||||||||||  ||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||      
T  19889717 gagaatgttaatcagtgccttcggggcattggttaagcatcaaatgaagtaagttttcattaaaaagtaatgtaattattacttaataaaaggtgacata 19889816  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||| ||| |||||||||||||    
T  19889817 ttatatttccaaaacataaaattctattta 19889846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 23788546 - 23788419
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    |||||||||||||  |||| | || |||||| |||| || ||| | || ||||||||||||||||| |||||| |||||||||| ||||||| ||| | |    
T  23788546 gagaatgttaaccaatgttctcggtgtattgattaaacaccaaaaaaa-taaatttttattaaaaagtaatgtaattattacttaataaaaaatgataat 23788448  T
Q  238 ttatattttcaagacaaaaattctattta 266  Q
    |||||||||||| | | ||||||||||||    
T  23788447 ttatattttcaaaatataaattctattta 23788419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 21646618 - 21646493
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| |||   | |||| ||||||||| || |||  ||||||| |||| |||||||| |||||| |||||||||| || |||||||||| |    
T  21646618 gagaatgttaaccagtgccctaggggcattggttaaacaccaaatgaagtaagttttcattaaaaagtaatgtaattattacttaat-aaaagtgacact 21646520  T
Q  238 ttatattttcaagaca-aaaattctat 263  Q
    |||||||| ||||||| ||||||||||    
T  21646519 ttatatttccaagacagaaaattctat 21646493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 23760709 - 23760606
Alignment:
Q  162 ggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattct 261  Q
    |||||||||||||||  |  | |||||||||||  ||||||| |||||| |||||||||||||||||| | | |||||||||||| |||||| ||||| |    
T  23760709 ggtattggttaagcactacaaaaagtaaattttatttaaaaagtaatgtaattattacttgataaaaa-taagagtttatatttttaagacataaattat 23760611  T
Q  262 attta 266  Q
    |||||    
T  23760610 attta 23760606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 4141634 - 4141718
Alignment:
Q  160 ggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattt 245  Q
    |||| |||| |||||||||||   ||||||||||||||||||| | ||||| |||||||||  |||||||||||| ||||||||||    
T  4141634 ggggcattgattaagcatcaaataaagtaaatttttattaaaagt-aatgtaattattactgaataaaaagtgacggtttatattt 4141718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 32345451 - 32345578
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||| | |||||| |||| |||||||||| ||  ||   |||||| ||||||| |||||| ||| | ||||||| || ||||||| |||||||    
T  32345451 gagaatgttaatcagtgtttctggg-tattggttaaacaataaataaagtaagtttttatcaaaaat-aatataattattatttaataaaaaatgacagt 32345548  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    ||||||||| |||||| |||||||||||||    
T  32345549 ttatatttttaagacagaaaattctattta 32345578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 13717172 - 13717276
Alignment:
Q  161 gggtattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaatt 259  Q
    ||||| |||||||||||| || | |||||| |||| || ||||| | |||| ||||||||||  |||||| | ||| |||||||||||||||||||| ||    
T  13717172 gggtaatggttaagcatctaaaataagtaagttttcatcaaaaagttatgtaattattacttattaaaaa-taacattttatattttcaagacaaaattt 13717270  T
Q  260 ctattt 265  Q
    ||||||    
T  13717271 ctattt 13717276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 4978816 - 4978767
Alignment:
Q  215 attacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||| |||||| |||  ||||||||||||||||||| |||||||    
T  4978816 attacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 4996724 - 4996675
Alignment:
Q  215 attacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||| |||||| |||  ||||||||||||||||||| |||||||    
T  4996724 attacttgatcaaaagtaacatcttatattttcaagacaaaacttctatt 4996675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 45907175 - 45907047
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| ||||    ||| |||||||||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  45907175 gagaatgttaaccagtgtccccgggatattggttaagcataaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagt 45907076  T
Q  238 ttatattttcaagacaaaaattctattta 266  Q
    |||||||| ||||||||||| ||||||||    
T  45907075 ttatatttacaagacaaaaaatctattta 45907047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 41434719 - 41434801
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||  |||||| ||||| ||||||    
T  41434719 aagtaaatttttattaaaaaataatgtaattattatttgataaaaagtgacagtttatatttctaagacagaaattatattta 41434801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 22035749 - 22035833
Alignment:
Q  183 gaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    ||||||| ||||||||||||| |||||| ||||||||||  |||||||||||||||||||||| ||||||| |||||||||||||    
T  22035749 gaagtaagtttttattaaaaaataatgtaattattacttattaaaaagtgacagtttatatttccaagacagaaaattctattta 22035833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 8117540 - 8117457
Alignment:
Q  183 gaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    ||||||| ||||||||||||| |||||| ||||||| || ||||||| | ||| ||||||||||||||||| ||||||||||||    
T  8117540 gaagtaagtttttattaaaaagtaatgtaattattatttaataaaaaataacaatttatattttcaagacataaattctattta 8117457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 21798798 - 21798896
Alignment:
Q  166 ttggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    ||||||||||| ||| |||||||| |||||||||| || |||||| |||||||||| || |||| |||||||||||| || ||||||| |||||||||||    
T  21798798 ttggttaagcaccaaaagaagtaa-tttttattaagaagtaatgtaattattacttaatgaaaaatgacagtttataattccaagacataaattctattt 21798896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 16861680 - 16861777
Alignment:
Q  169 gttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||| ||| |||| |||  |||||||||||| |||||| |||| || || ||||||| ||||||||||||||| ||||||| ||||||||||||    
T  16861680 gttaagcaccaaaagaaataaggttttattaaaaagtaatgtaattaatatttaataaaaaatgacagtttatatttccaagacataaattctattta 16861777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 16979940 - 16980038
Alignment:
Q  165 attggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattcta 262  Q
    |||||||||||||| || | |||||||||||||| ||||| |  ||||||||||||| ||| |||||| |||  ||||||||||||||||||| |||||    
T  16979940 attggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaatttcta 16980038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 36636122 - 36636020
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||   |||||| ||||||||||||| |||||| |||||||||| |||||| ||||| |||||||| | ||||| | ||||||||||    
T  36636122 attggttaagcaccaaataaagtaagtttttattaaaaaataatgtaattattacttaataaaaggtgaccgtttatatctccaagatagaaaattctat 36636023  T
Q  264 tta 266  Q
    |||    
T  36636022 tta 36636020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 11740458 - 11740386
Alignment:
Q  182 agaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaa 254  Q
    ||||||||| |||||||||||| |  ||| || |||| ||||| |||||| ||||||||||||||||||||||    
T  11740458 agaagtaaaattttattaaaaagtggtgtaataattagttgatcaaaagtaacagtttatattttcaagacaa 11740386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 18037942 - 18037863
Alignment:
Q  187 taaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||   |||| ||||||| ||||| |||||| ||| ||||||||||||| |||||| || ||||||    
T  18037942 taaatttttattaaaaaacgatgtaattattatttgatcaaaagtaacaatttatattttcaaaacaaaatttttattta 18037863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 33194719 - 33194822
Alignment:
Q  164 tattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattcta 262  Q
    ||||||||||||| | || | ||||||||||||| |||||| || ||| || ||||||| || ||| |||| |||||||||||| ||||||||| || ||    
T  33194719 tattggttaagcaactaaaataagtaaatttttaataaaaagtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaaaactttta 33194818  T
Q  263 ttta 266  Q
    ||||    
T  33194819 ttta 33194822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 30775013 - 30774943
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaa 254  Q
    ||||||||||||| ||||||  | ||| || ||||| |||||||| ||||||| |||||||||||||||||    
T  30775013 aagtaaatttttaataaaaagcagtgtaatcattacatgataaaatgtgacagcttatattttcaagacaa 30774943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 28004195 - 28004272
Alignment:
Q  187 taaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||||||||||||||||| ||| | ||||||| ||||| ||||   | || |||||||||||||||||||||| |||||    
T  28004195 taaatttttattaaaaat-aatttaattattatttgatcaaaaccaaaagcttatattttcaagacaaaaattttattt 28004272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 39065648 - 39065547
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    ||||||||||||  || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  39065648 attggttaagcactaaaagaagtaaatttttattaaaaaataatgtcattattacttgataaaaagtgacagtttatatttttaagacagaaattctatt 39065549  T
Q  265 ta 266  Q
    ||    
T  39065548 ta 39065547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 41675785 - 41675685
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||||| ||| ||||||||||||||||||||||  ||| | |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||    
T  41675785 attggttaagcaccaaaagaagtaaatttttattaaaaagaaatataattattacttgataaaaaatgatagtttatattttcaaaacagaaattctatt 41675686  T
Q  265 t 265  Q
    |    
T  41675685 t 41675685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 39534248 - 39534155
Alignment:
Q  169 gttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattcta 262  Q
    |||||||| |||  || |||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  39534248 gttaagcaccaaatgaggtaaatttttattaaaaagtaatgtaattattacttgataaagggtgacagtttatattttcaagacagaaattcta 39534155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 37919417 - 37919490
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaa 257  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||| |||||||    
T  37919417 aagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacagtttatattttcaaaacaaaaa 37919490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 29795508 - 29795604
Alignment:
Q  169 gttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||||||| ||| |||| ||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  29795508 gttaagcaccaaaagaattaagtttttgttaaaaagtaatgtaattattaattgataaaaagtgacagtttatagttttaagataaaaattctattt 29795604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 20821908 - 20821987
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctat 263  Q
    |||||| ||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||| ||||||| ||||||||    
T  20821908 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaacaattctat 20821987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 14110708 - 14110627
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||||| | |||| |||||||||| |||||||||||| ||||||||||  |||||||||||| ||||||    
T  14110708 aagtaaatttttattaaaaagttatgtaattattactt-ataaaaagtgacggtttatatttctaagacaaaaattatattta 14110627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 28462657 - 28462556
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    ||||||||| || |||  ||||||| |||||||||||| | ||||| |||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||    
T  28462657 attggttaaacaccaaatgaagtaagtttttattaaaagt-aatgtaattattacttaataaaaagtgatagtttatatttccaagacaaaaaattctat 28462559  T
Q  264 tta 266  Q
    |||    
T  28462558 tta 28462556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 900329 - 900246
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||| ||||||||||||| |||| | |||||||||| ||||||| |||||||||| |||||||||||| |||||| ||||||    
T  900329 aagtaagtttttattaaaaagtaatataattattacttaataaaaaatgacagtttaaattttcaagacagaaaattatattta 900246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 39209476 - 39209376
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||  ||||||||||||||||||||| | |||| ||||||| || || |||||||||||||||||||| ||| ||| ||||||||||    
T  39209476 attggttaagcaccaaacgaagtaaatttttattaaaaagtgatgt-attattatttaat-aaaagtgacagtttatatttccaaaacagaaaattctat 39209379  T
Q  264 tta 266  Q
    |||    
T  39209378 tta 39209376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 30924834 - 30924932
Alignment:
Q  168 ggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagac-aaaaattctattt 265  Q
    ||||||||| ||| |||||||| ||||| ||| ||| |||||| ||||||||||||| ||||||||| | ||||| || || ||| |||||||||||||    
T  30924834 ggttaagcaccaaaagaagtaagtttttgttagaaagtaatgtaattattacttgatgaaaagtgacggattatagttccatgacaaaaaattctattt 30924932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 43917584 - 43917686
Alignment:
Q  164 tattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattcta 262  Q
    ||||||||||||||| || | |||||||||||||| ||||| |  ||| ||||||| ||||| |||||| ||   |||||||||||||||||||||| ||    
T  43917584 tattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaatttta 43917683  T
Q  263 ttt 265  Q
    |||    
T  43917684 ttt 43917686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 34678294 - 34678220
Alignment:
Q  192 ttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    ||||| |||||| | |||| ||||||||||||| |||||| ||| |||| ||||||||||||||  |||||||||    
T  34678294 ttttaataaaaaattatgtaattattacttgatcaaaagtaacattttacattttcaagacaaattttctattta 34678220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 36861155 - 36861212
Alignment:
Q  200 aaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaa 257  Q
    ||||||||||| |||||||  |||| |||| ||| |||||||||||||||||||||||    
T  36861155 aaaattaatgtaattattaaatgatgaaaaatgaaagtttatattttcaagacaaaaa 36861212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 23797588 - 23797506
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    ||||||||||||| | |||| | |||  ||||||||||| | ||  |||||| ||||||||||||||| |||| |||||||||    
T  23797588 aagtaaatttttaatgaaaagtgatgaaattattacttggtcaagtgtgacaatttatattttcaagataaaacttctattta 23797506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 38362318 - 38362264
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattac 219  Q
    ||||||||||||||||   ||||||||||||||||||||  ||||| ||||||||    
T  38362318 attggttaagcatcaaataaagtaaatttttattaaaaagcaatgtaattattac 38362264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 44649002 - 44648952
Alignment:
Q  215 attacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    ||||||| || |||||| ||| |||||||||||||||||||| ||||||||    
T  44649002 attactttatcaaaagtaacattttatattttcaagacaaaatttctattt 44648952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 33945041 - 33945001
Alignment:
Q  226 aaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||| || |||||||||||||||||||||||| ||||||    
T  33945041 aaaagtaactgtttatattttcaagacaaaaattttattta 33945001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 42654633 - 42654685
Alignment:
Q  212 attattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||| ||||||| ||| |||||||||||  |||||||||||| ||||    
T  42654633 attattacttaataaaaaatgatagtttatatttctaagacaaaaattttatt 42654685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 14863335 - 14863436
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||||| ||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  14863335 attggttaagcaccaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagtgacagtttatattttcaagacataaattatatt 14863434  T
Q  265 ta 266  Q
    ||    
T  14863435 ta 14863436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 7609681 - 7609557
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| ||| |   |||| |||||||||||| ||| |||||||| ||||||||||||| |||||| |||||||||||||||||| ||| |||    
T  7609681 gagaatgttaaccagtgctcccggggcattggttaagcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaaatgatagt 7609582  T
Q  238 ttatattttcaagacaaaaattcta 262  Q
    |||||||| ||| ||| ||||||||    
T  7609581 ttatatttccaaaacagaaattcta 7609557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 21052742 - 21052656
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaaga 251  Q
    |||||||||||| ||| |||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||    
T  21052742 attggttaagcaccaaaagaagtaagtttttattaaaaaatcatgtaattattacttgataaaaagtgacagtttatatttgcaaga 21052656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 2611269 - 2611169
Alignment:
Q  159 tggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaat 258  Q
    ||||| |||||||||||| |||  ||||||| ||||||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||| ||||    
T  2611269 tggggcattggttaagcaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacagcttatatttccaagacataaat 2611170  T
Q  259 t 259  Q
    |    
T  2611169 t 2611169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 11320098 - 11320204
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| ||||  ||| |  |||||||||||| ||| | |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  11320098 gagaatgttaaccagtgtcattgagacattggttaagcaccaaaa-aagttaatttttattaaaaagtaatgtaattattacttgataaaaagtgacagt 11320196  T
Q  238 ttatattt 245  Q
    ||||||||    
T  11320197 ttatattt 11320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 35185251 - 35185356
Alignment:
Q  161 gggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaatt 259  Q
    |||||||||||||||| |||   || ||| ||||||||||||| |||||| |||||||||  || |||||||||||||||||||||||||||| ||||||    
T  35185251 gggtattggttaagcaccaaataaaataagtttttattaaaaagtaatgtaattattactaaat-aaaagtgacagtttatattttcaagacataaaatt 35185349  T
Q  260 ctattta 266  Q
    |||||||    
T  35185350 ctattta 35185356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 12187203 - 12187282
Alignment:
Q  186 gtaaatttttattaaaaat-taatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||| |||||||||||||  |||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  12187203 gtaagtttttattaaaaaaataatgtaattattacttg-taaaaagtgaccgtttatatttccaagacaaaaattctattt 12187282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 22180372 - 22180286
Alignment:
Q  162 ggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaa 249  Q
    ||||||||||||||| |||   || ||||||||||||||||| |||| | ||||||| || ||||||| |||||||||||||||||||    
T  22180372 ggtattggttaagcaccaaataaaataaatttttattaaaaaataatataattattatttaataaaaa-tgacagtttatattttcaa 22180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 31619318 - 31619418
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||  ||||||||||||||||||||| |||||| ||||||| || || | ||||||| ||||||||||  |||||| ||||||||||    
T  31619318 attggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaattattatttcat-agaagtgac-gtttatatttctaagacagaaaattctat 31619415  T
Q  264 tta 266  Q
    |||    
T  31619416 tta 31619418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 16802022 - 16802127
Alignment:
Q  161 gggtattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaatt 259  Q
    |||||||||||||||| | || | || ||| ||||||| ||||| |||||| |||||||||| || |||||| | | |||||||||||||||||||  ||    
T  16802022 gggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaatttt 16802120  T
Q  260 ctattta 266  Q
    |||||||    
T  16802121 ctattta 16802127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 11815929 - 11816010
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||||| ||||||| ||||||   ||| || ||||||| || |||||| |||  ||||||||||||||||||| ||||||||    
T  11815929 aagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctattt 11816010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 16611503 - 16611603
Alignment:
Q  161 gggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattc 260  Q
    |||||||||||||  ||||| | ||| || ||||||||||||| |||| | ||||||||||||| ||||   ||  |||||||||| |||| ||||||||    
T  16611503 gggtattggttaaatatcaaaa-aagcaagtttttattaaaaaataatataattattacttgatgaaaaacaacgttttatatttttaagataaaaattc 16611601  T
Q  261 ta 262  Q
    ||    
T  16611602 ta 16611603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 19147289 - 19147165
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||| |  | |||||||| ||||| ||||||| ||| |||||||| |||||||||| || |||||| ||||||| ||||||||||||||||||    
T  19147289 gagaatgttaatcaatatttttgggatattgattaagcaccaaaagaagtaagtttttattaataagtaatgtaattattatttgataaaaagtgacagt 19147190  T
Q  238 ttatattttcaagacaaaaattcta 262  Q
    |||||||||||||||| ||||||||    
T  19147189 ttatattttcaagacagaaattcta 19147165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 31647717 - 31647821
Alignment:
Q  162 ggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattct 261  Q
    ||||||||||||||| ||| |||| ||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||| |||||||    
T  31647717 ggtattggttaagcaccaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagtgatagtttatatttctaagacagaaattct 31647816  T
Q  262 attta 266  Q
    |||||    
T  31647817 attta 31647821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 38320229 - 38320131
Alignment:
Q  169 gttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    ||||||||||||   |||||| ||||||||||||| |||||| |||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||    
T  38320229 gttaagcatcaaataaagtaagtttttattaaaaagtaatgtaattattacttaataagaagtgacagtttatatttccaagacagaaaattctattta 38320131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 31242045 - 31241964
Alignment:
Q  186 gtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||||||||||||||| |||||| ||||||| || |||||||||||| |||||||||||||||||| |||||||||||||    
T  31242045 gtaaatttttattaaaaagtaatgtaattattatttaataaaaagtgaccgtttatattttcaagacagaaaattctattta 31241964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 47397577 - 47397705
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||| |  ||| | || ||||||||||||||| ||| || |||||||||||||| |||| |||| | ||||||| ||||||||||||||||||    
T  47397577 gagaatgttaatcgatgtctctgcggtattggttaagcaccaaaagtagtaaatttttatttaaaagtaatataattattatttgataaaaagtgacagt 47397676  T
Q  238 ttatattttcaagacaaaaattctattta 266  Q
    ||||||||  || | | ||||||||||||    
T  47397677 ttatatttctaaaatagaaattctattta 47397705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 54248982 - 54249080
Alignment:
Q  167 tggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    ||||||| | |||| |||||||| ||||||||||||| || ||| ||||| |||||||||||| | |||||||||||||| || | | |||||||||||    
T  54248982 tggttaaacctcaaaagaagtaagtttttattaaaaaatattgtaattatcacttgataaaaaataacagtttatatttttaaaatataaattctattt 54249080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 3319364 - 3319283
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatatttt 246  Q
    |||| ||||||||||| |||| ||||||||||||||||  |||| | ||||||| ||||| |||| ||||||||||||||||    
T  3319364 attgattaagcatcaaaagaaataaatttttattaaaaggtaatataattattatttgatgaaaaatgacagtttatatttt 3319283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 38319606 - 38319553
Alignment:
Q  214 tattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  38319606 tattacttaataaaaagtgacagtttatattttcaaaacagaaaattctattta 38319553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 20542662 - 20542608
Alignment:
Q  212 attattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||| ||||||||||||||||||||||||||||| ||||| | ||||| ||||||    
T  20542662 attactacttgataaaaagtgacagtttatatttacaagatagaaattttattta 20542608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 16341194 - 16341116
Alignment:
Q  187 taaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    ||||||||||| ||||| | |||| || ||||||| || |||||| ||| |||||||||  |||||||||||| |||||    
T  16341194 taaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttattt 16341116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 44291349 - 44291243
Alignment:
Q  160 ggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaatt 259  Q
    |||| |||||||||||| ||| |||||||| | ||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  44291349 ggggcattggttaagcaccaaaagaagtaagtatttattaaaaagtaatgtaattattacttaataaaaagtgacagtttatatttccaagacagaaatt 44291250  T
Q  260 ctattta 266  Q
    |||||||    
T  44291249 ctattta 44291243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 15671231 - 15671130
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||| | |||  ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  15671231 attggttaagaaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagtgacagtttatatttcgaagacaaaaattttatt 15671132  T
Q  265 ta 266  Q
    ||    
T  15671131 ta 15671130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 43862913 - 43863034
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| |||    ||||| |||||||||||  |||  ||||||| ||||||||||||| |||||| |||||||||| ||||| |||||||||    
T  43862913 gagaatgttaaccggtgcccctggggcattggttaagccccaaatgaagtaagtttttattaaaaagtaatgtaattattacttaataaagagtgacagt 43863012  T
Q  238 ttatattttcaagacaaaaatt 259  Q
    |||||||| ||||||| |||||    
T  43863013 ttatatttccaagacagaaatt 43863034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 42163703 - 42163621
Alignment:
Q  183 gaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctatt 264  Q
    ||||||| ||||||||||||| |||||| |||||||||| |||||||||||| |||||||||| ||||||| |||||||||||    
T  42163703 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacggtttatatttccaagacagaaaattctatt 42163621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 27143998 - 27144100
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||  ||| ||| ||||||||||||| |||||| |||||||||| ||||||||| |||||||||||||  || ||| ||||||||||    
T  27143998 attggttaagcaacaaatgaactaagtttttattaaaaaataatgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattctat 27144097  T
Q  264 tta 266  Q
    |||    
T  27144098 tta 27144100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 32720637 - 32720535
Alignment:
Q  163 gtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattct 261  Q
    ||||||||||||||  ||   |||||| ||||||||||||| |||| | |||||||||| ||||| ||||||||||||||||||||||| | ||||||||    
T  32720637 gtattggttaagcactaaattaagtaagtttttattaaaaaataatataattattacttaataaatagtgacagtttatattttcaagaaagaaaattct 32720538  T
Q  262 att 264  Q
    |||    
T  32720537 att 32720535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 35322016 - 35322107
Alignment:
Q  173 agcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||| ||| |||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||  ||||| |||||||||||||    
T  35322016 agcaccaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtga-agtttatatttctaagac-aaaattctattta 35322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 44041409 - 44041337
Alignment:
Q  195 tattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||    
T  44041409 tattaaaaagtaatgtaattattacttaataaaaagtgacagtttatattaccaagacagaaaattctattta 44041337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 17109630 - 17109547
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||||||||||||||||| | |||| |||||||||| |||||| || ||||||||||||| ||||| | |||||||||||||    
T  17109630 aagtaaatttttattaaaaagttatgtaattattacttaataaaatgttacagtttatatttccaagatagaaaattctattta 17109547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 23208230 - 23208157
Alignment:
Q  191 tttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    ||||||||||||| |||||| ||||   ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  23208230 tttttattaaaaagtaatgtaatta---cttaataaaaagtgacagtttatattttcaagacagaaaattctattta 23208157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 6785858 - 6785808
Alignment:
Q  215 attacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  6785858 attacttgatcaaaagtaacattttatattttcaagacaaaaattctattt 6785808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 36258695 - 36258779
Alignment:
Q  184 aagtaaatttttatt-aaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||| |||||||| ||||| |||||| || ||||||| ||||||| ||||| |||||||||  |||||| |||||||||||||    
T  36258695 aagtaagtttttattaaaaaagtaatgtaatgattacttaataaaaaatgacattttatatttctaagacagaaaattctattta 36258779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 17560724 - 17560771
Alignment:
Q  182 agaagtaaatttttattaaaaattaatgtgattattacttgataaaaa 229  Q
    |||| |||||||||||||||||||||||| ||||||| ||||| ||||    
T  17560724 agaaataaatttttattaaaaattaatgtaattattatttgatcaaaa 17560771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 49419139 - 49419064
Alignment:
Q  192 ttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    |||||||||||| | |||| ||||||| || ||||||||||||| |||||||||  || ||| |||||||||||||    
T  49419139 ttttattaaaaagttatgtaattattagttaataaaaagtgacaatttatatttctaatacagaaaattctattta 49419064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 49710970 - 49711044
Alignment:
Q  191 tttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||| | ||||||| || ||||||| | ||| |||||||||  |||||| ||||||||||||    
T  49710970 tttttattaaaaattaatataattatta-tttataaaaaataacattttatatttctaagacagaaattctattta 49711044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 47877369 - 47877311
Alignment:
Q  188 aaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatatttt 246  Q
    |||||||||||||||| || ||| ||||||| || ||||||| ||| ||||||||||||    
T  47877369 aaatttttattaaaaaatagtgtaattattatttaataaaaaatgatagtttatatttt 47877311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 52992443 - 52992544
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||   |||||| ||||||  ||||| |||||| |||||||| | ||||||| ||| ||||||||||||||| ||| |||||| |||    
T  52992443 attggttaagcaccaaataaagtaattttttaccaaaaaataatgtaattattac-taataaaaaatgatagtttatattttcaaaacagaaaattttat 52992541  T
Q  264 tta 266  Q
    |||    
T  52992542 tta 52992544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 4020116 - 4020197
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    |||||| ||||||| ||||| |  ||| || ||||||| || |||| | ||| |||||||||||||||||||| ||||||||    
T  4020116 aagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctattt 4020197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 28709683 - 28709579
Alignment:
Q  163 gtattggttaagcat-caagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattct 261  Q
    ||||||||||||||| ||| | |||||| ||| ||| ||||| |  | | || |||| ||||| |||||| ||| ||||||||||||||| |||| ||||    
T  28709683 gtattggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttct 28709584  T
Q  262 attta 266  Q
    |||||    
T  28709583 attta 28709579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 16950 - 16843
Alignment:
Q  159 tggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaat 258  Q
    |||| ||||||||||||| ||| |||| ||| ||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||| |||     
T  16950 tgggctattggttaagcaccaaaagaaataagtttttattaaaaaattatataattattacttgataaaaagtgacagtttatattttcaagacagaaac 16851  T
Q  259 tctattta 266  Q
    ||||||||    
T  16850 tctattta 16843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 50127467 - 50127360
Alignment:
Q  160 ggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaatt 259  Q
    |||| |||||||||| | ||| |||||||| ||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||| ||||||| |||||    
T  50127467 ggggcattggttaagtaccaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaaatgacagtttatatttccaagacagaaatt 50127368  T
Q  260 ctatttac 267  Q
    ||||||||    
T  50127367 ctatttac 50127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 30627730 - 30627628
Alignment:
Q  165 attggttaagcatcaagagaagtaaattttta-ttaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctat 263  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||| |||||||||||||| |||||||| ||||||| |||||||||    
T  30627730 attggttaagcaccaagagaagtaaatttttaattaaaaagtaatgtaatcattactttataaaaagtgacaggttatatttccaagacataaattctat 30627631  T
Q  264 tta 266  Q
    |||    
T  30627630 tta 30627628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 40391332 - 40391230
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctat 263  Q
    |||||||||||| |||  ||||| | ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  40391332 attggttaagcaccaaatgaagtgagtttttatcaaaaagtaatgtaattattacttgataaaaagtgacagtttatattttcaagacagaaaattcgat 40391233  T
Q  264 tta 266  Q
    |||    
T  40391232 tta 40391230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 26855967 - 26855839
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| |||  |  |||| |||||||||||| |||   ||||||||||||||||||| | ||||| |||||||||||||||||||||||||     
T  26855967 gagaatgttaaccggtgcctccggggcattggttaagcaccaaataaagtaaatttttattaaaagt-aatgtaattattacttgataaaaagtgacaga 26855869  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||||||| |||||||||||||    
T  26855868 ttatatttccaagacaaaaaattctattta 26855839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 31884574 - 31884473
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||||| ||| | |||||| ||||||||||||| |||||| ||||||| |||||||||| || |||||||||||| ||||| | ||||||||||    
T  31884574 attggttaagcaccaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaaatgtcagtttatatttccaagatagaaattctatt 31884475  T
Q  265 ta 266  Q
    ||    
T  31884474 ta 31884473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 48282979 - 48282904
Alignment:
Q  191 tttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||| |||||| |||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  48282979 tttttactaaaaagtaatgtaattattacctgataaaaagtgacagattatattttcaagacagaaattctattta 48282904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 19066878 - 19066960
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||||  ||||||| |||||||||||    
T  19066878 aagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagacaacaattctattta 19066960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 19114768 - 19114850
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||||||||| |||||||||  ||||||| |||||||||||    
T  19114768 aagtaaatttttattaaaaagtattgtaattattacttggtaaaaagtgacaatttatatttctaagacaacaattctattta 19114850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 15419792 - 15419663
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    |||||| ||||||||||| |  || | ||||||||| || |||   |||||||||||||||||||| |||| | |||||||||| ||||||||| |||||    
T  15419792 gagaatattaacccgtgtctccggagcattggttaaacaccaaataaagtaaatttttattaaaaagtaatataattattacttaataaaaagtaacagt 15419693  T
Q  238 ttatattttcaagac-aaaaattctattta 266  Q
    |||||||| ||| || ||||||||||||||    
T  15419692 ttatatttccaatacaaaaaattctattta 15419663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 50468922 - 50468841
Alignment:
Q  164 tattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattt 245  Q
    ||||||||||| ||||||  |||||||||||||||||||| |||||| |||||||||| ||||||| |||||| ||||||||    
T  50468922 tattggttaagtatcaagtaaagtaaatttttattaaaaagtaatgtaattattacttaataaaaaatgacaggttatattt 50468841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 44109167 - 44109083
Alignment:
Q  183 gaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagaca-aaaattctattta 266  Q
    ||||||| ||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||    
T  44109167 gaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagggacagtttatatttccaagatagaaaattctattta 44109083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 33827966 - 33827837
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    |||||||||||||  ||| | || ||||||||||||| | |||   || ||| ||||||||||||| |||||| |||||||||| |||||||||||  ||    
T  33827966 gagaatgttaaccaatgtctctgaggtattggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgt 33827867  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||||||| |||||| ||||||    
T  33827866 ttatatttccaagacagaaaattttattta 33827837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 33839999 - 33840128
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    |||||||||||||  ||| | || ||||||||||||| | |||   || ||| ||||||||||||| |||||| |||||||||| |||||||||||  ||    
T  33839999 gagaatgttaaccaatgtctctgaggtattggttaagaaccaaataaaataactttttattaaaaagtaatgtaattattacttaataaaaagtgatcgt 33840098  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||||||| |||||| ||||||    
T  33840099 ttatatttccaagacagaaaattttattta 33840128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 27742552 - 27742617
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaag 230  Q
    |||||||||||| ||| |||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  27742552 attggttaagcaacaaaagaagtaattttttattaaaaagtaatgtaattattacttaataaaaag 27742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 13534592 - 13534512
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||||||||||||| |||||| ||||||| ||| ||||||  |||| |||||||||| |||| |  |||||||||    
T  13534592 aagtaaatttttattaaaaagtaatgtaattattatttggtaaaaaaagacaatttatatttttaagagagcaattctatt 13534512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Complemental strand, 20471413 - 20471345
Alignment:
Q  198 taaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||||  ||||||| |||| ||||||    
T  20471413 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagacaacaattatattta 20471345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 20560124 - 20560192
Alignment:
Q  198 taaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||||  ||||||| |||| ||||||    
T  20560124 taaaaagtaatgtaattattttttgataaaaagtgacagtttatatttctaagacaacaattatattta 20560192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 13969216 - 13969113
Alignment:
Q  163 gtattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattct 261  Q
    |||||||||||||| | || | |||||| ||||||| ||||| |  ||| || ||||||| || |||||| ||| |||||||||||||||||||| ||||    
T  13969216 gtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttct 13969117  T
Q  262 attt 265  Q
    ||||    
T  13969116 attt 13969113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 16963689 - 16963639
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgatta 215  Q
    |||||||||||| |||  ||||||||||||||||||||| |||||| ||||    
T  16963689 attggttaagcaccaaatgaagtaaatttttattaaaaagtaatgtaatta 16963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 46295990 - 46295885
Alignment:
Q  161 gggtattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaatt 259  Q
    ||||||| |||||||||| || | || ||| ||||||| ||||| |  ||| || |||||||||| |||||| ||| ||||||||||||||| |||| ||    
T  46295990 gggtatttgttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaattt 46295891  T
Q  260 ctattt 265  Q
     |||||    
T  46295890 ttattt 46295885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 1243 - 1118
Alignment:
Q  141 aatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagttta 240  Q
    |||||||||| ||| || || | ||||||||||| |||||   || |||  |||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  1243 aatgttaaccggtgcttctgagatattggttaagaatcaaataaaataagcttttattaaaaagtaatgtaattattacttaataaaaagtgacagttta 1144  T
Q  241 tattttcaagacaaaaattctattta 266  Q
    ||||||||||| ||||||||||||||    
T  1143 tattttcaagaaaaaaattctattta 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 22538 - 22437
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||||| ||| |||||||| ||||||||||| | |||||| ||||||| ||||||||||||||| |||||||||| ||| |||||| || ||||    
T  22538 attggttaagcaccaaaagaagtaagtttttattaaagagtaatgtaattattatttgataaaaagtgacggtttatatttccaacacaaaagttatatt 22439  T
Q  265 ta 266  Q
    ||    
T  22438 ta 22437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 38800 - 38901
Alignment:
Q  165 attggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctatt 264  Q
    |||||||||| |||||   || ||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||| | ||||||||||    
T  38800 attggttaagaatcaaataaaataagtttttattaaaaagtaatgtaattattacttgataaaaaatgacagtttatatttccaagatataaattctatt 38899  T
Q  265 ta 266  Q
    ||    
T  38900 ta 38901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 266
Target Start/End: Original strand, 17506236 - 17506366
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttt--tattaaaaattaatgtgattattacttgataaaaagtgaca 235  Q
    ||||||||||||| |||  | | ||| |||||||| ||| ||| |||||||| ||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  17506236 gagaatgttaaccggtgcctctcgggcattggttaggcaccaaaagaagtaattttttttattaaaaagtaatgtaattattacttgataaaaagtgaca 17506335  T
Q  236 gtttatattttcaagacaaaaattctattta 266  Q
    |||||||||| ||| | | ||||| ||||||    
T  17506336 gtttatatttccaaaatataaattatattta 17506366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 4803157 - 4803256
Alignment:
Q  168 ggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgat-aaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    ||||||||| ||| ||||||||||||||| |||||| |||||| ||||||||||||| |||||||  ||||||||||||  || ||| ||||||||||||    
T  4803157 ggttaagcaccaaaagaagtaaatttttactaaaaagtaatgtaattattacttgataaaaaagtagcagtttatatttcaaacacagaaattctattta 4803256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 21809894 - 21809819
Alignment:
Q  191 tttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    ||||||||||||| ||| || |||||||||||||||||||||||| |||||||||  ||||||| |||||||||||    
T  21809894 tttttattaaaaagtaacgtaattattacttgataaaaagtgacaatttatatttctaagacaacaattctattta 21809819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 19418569 - 19418683
Alignment:
Q  141 aatgttaacccgtgtttttggggtattggttaagcat-caagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagttt 239  Q
    |||||||||  ||||||| |||||||||||||||||| ||| ||||||||  |||||||||||| | |||| || ||||  || | |||||| |||||||    
T  19418569 aatgttaactagtgttttcggggtattggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataattagctggtcaaaagtaacagttt 19418668  T
Q  240 atattttcaagacaa 254  Q
    ||||||| |||||||    
T  19418669 atatttttaagacaa 19418683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 10008191 - 10008288
Alignment:
Q  165 attggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattct 261  Q
    |||||||||||| | || |||||||| ||||||||||||| |  ||| ||||||||||||| |||||| || ||||||||||| ||||||||| ||||    
T  10008191 attggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct 10008288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 10252938 - 10253053
Alignment:
Q  139 agaatgttaacccgtgtttttggggtattggttaagcatc-aagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    |||||||||||| |||| |  | ||||||||||||||| | || ||||||||  |||||||||||| | |||| || |||| ||  | |||| | |||||    
T  10252938 agaatgttaaccggtgtctccgaggtattggttaagcaaccaaaagaagtaagattttattaaaaaatgatgtaataattagttagtcaaaaataacagt 10253037  T
Q  238 ttatattttcaagaca 253  Q
    ||||||||||||||||    
T  10253038 ttatattttcaagaca 10253053  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 18493261 - 18493333
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaa 256  Q
    |||||| ||||||| ||||| |  ||| || |||||||||| |||||| ||| ||||||||||||||| ||||    
T  18493261 aagtaagtttttataaaaaagttttgtaataattacttgatcaaaagtaacattttatattttcaagataaaa 18493333  T

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Target: scaffold0078 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 1003 - 874
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcatcaagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagt 237  Q
    ||||||||||||| |||||| |||||  |||||||| ||  ||   |||||||||||||||| ||  |||||| ||||||| || ||||||| ||| |||    
T  1003 gagaatgttaaccagtgtttctggggatttggttaaacactaaataaagtaaatttttattagaatgtaatgtaattattatttaataaaaaatgatagt 904  T
Q  238 ttatattttcaagaca-aaaattctattta 266  Q
    |||||||| ||||||| |||||||||||||    
T  903 ttatatttccaagacagaaaattctattta 874  T

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Target: scaffold0068 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 52030 - 52112
Alignment:
Q  184 aagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||| ||||||||||||| |||||| ||||||| ||| |||||| ||||| |||||||||  ||||||| |||||||||||    
T  52030 aagtaagtttttattaaaaagtaatgtaattattatttggtaaaaaatgacaatttatatttctaagacaacaattctattta 52112  T

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Target: scaffold1372 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 1330 - 1284
Alignment:
Q  220 ttgataaaaagtgacagtttatattttcaagacaaaaattctattta 266  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  1330 ttgataaaaagtgacagtttatatttccaagacagaaattctattta 1284  T

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Target: scaffold1372; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 1379 - 1330
Alignment:
Q  182 agaagtaaatttttattaaaaattaatgtgattattacttgataaaaagt 231  Q
    |||||||| |||||||||||||  ||||| ||||||||||||||||||||    
T  1379 agaagtaagtttttattaaaaagaaatgtaattattacttgataaaaagt 1330  T

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Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 15508 - 15379
Alignment:
Q  138 gagaatgttaacccgtgtttttggggtattggttaagcat-caagagaagtaaatttttattaaaaattaatgtgattattacttgataaaaagtgacag 236  Q
    ||||||||||| | |||| |  |||||||||||||| ||| ||| | |||||| ||||||| ||||||   | | ||  ||||||| | |||||| |||     
T  15508 gagaatgttaatcagtgtctcaggggtattggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaagtaacat 15409  T
Q  237 tttatattttcaagacaaaaattctattta 266  Q
     |||||||||||||||||||||||||||||    
T  15408 cttatattttcaagacaaaaattctattta 15379  T

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Target: scaffold0079 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 51667 - 51745
Alignment:
Q  187 taaatttttattaaaaattaatgtgattattacttgataaaaagtgacagtttatattttcaagacaaaaattctattt 265  Q
    ||||||||||| ||||| | |||| || ||||||| || |||||| ||| |||||||||  |||||||||||| |||||    
T  51667 taaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttattt 51745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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