View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_23 (Length: 345)
Name: NF13253_low_23
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 51741529 - 51741228
Alignment:
| Q |
18 |
attcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaaga |
117 |
Q |
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| T |
51741529 |
attcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaaga |
51741430 |
T |
|
| Q |
118 |
ttccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51741429 |
ttccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtca |
51741330 |
T |
|
| Q |
218 |
atctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51741329 |
atctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaag |
51741230 |
T |
|
| Q |
318 |
ac |
319 |
Q |
| |
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|| |
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| T |
51741229 |
ac |
51741228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 10202330 - 10202058
Alignment:
| Q |
18 |
attcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaaga |
117 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||| | |
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| T |
10202330 |
attcctcccaatcactcatatctattgttagtgaactatttcctctaccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaaca |
10202231 |
T |
|
| Q |
118 |
ttccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtca |
217 |
Q |
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||| ||||||||| |||||| |||||||| ||||| ||||||||||| | ||| ||||| |||| ||||||||||||||||||||| || |||||||| |
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| T |
10202230 |
ttcaactgtttgtcttccattcttcacaaaattttctacatatccaatttttcccgaagcgacatgcctgttataaaaatcaaccatgaagttattgtca |
10202131 |
T |
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| Q |
218 |
atc---tcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccacttt |
287 |
Q |
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||| |||||| ||||||||||||| || || ||||||||||| |||||||| | | ||||||||||||||| |
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| T |
10202130 |
atctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttccttagattgtactccacttt |
10202058 |
T |
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