View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13253_low_24 (Length: 344)

Name: NF13253_low_24
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13253_low_24
NF13253_low_24
[»] chr5 (19 HSPs)
chr5 (133-332)||(41929233-41929432)
chr5 (133-229)||(3729331-3729427)
chr5 (133-231)||(8159068-8159166)
chr5 (136-229)||(34766885-34766978)
chr5 (133-220)||(21583853-21583940)
chr5 (135-231)||(9793732-9793828)
chr5 (133-221)||(21020686-21020774)
chr5 (135-223)||(39508316-39508404)
chr5 (135-228)||(20736158-20736251)
chr5 (146-231)||(25081760-25081845)
chr5 (146-231)||(25139729-25139814)
chr5 (139-231)||(9913795-9913887)
chr5 (135-222)||(9793635-9793722)
chr5 (133-224)||(2068963-2069050)
chr5 (141-226)||(20815668-20815753)
chr5 (133-231)||(3711175-3711277)
chr5 (228-295)||(41911850-41911917)
chr5 (136-198)||(41910219-41910281)
chr5 (135-229)||(38451039-38451122)
[»] scaffold0306 (1 HSPs)
scaffold0306 (135-231)||(13056-13152)
[»] scaffold0152 (1 HSPs)
scaffold0152 (135-231)||(22175-22271)
[»] chr3 (15 HSPs)
chr3 (133-228)||(37115885-37115980)
chr3 (135-229)||(36404222-36404316)
chr3 (133-229)||(45602979-45603075)
chr3 (135-231)||(29360475-29360571)
chr3 (137-225)||(35534481-35534569)
chr3 (133-229)||(52742347-52742443)
chr3 (135-223)||(39391958-39392046)
chr3 (135-227)||(46487267-46487358)
chr3 (141-229)||(14201712-14201798)
chr3 (135-221)||(48944105-48944191)
chr3 (140-212)||(16353494-16353566)
chr3 (135-210)||(3618340-3618415)
chr3 (137-207)||(48644538-48644608)
chr3 (135-208)||(54882992-54883065)
chr3 (136-199)||(47599389-47599452)
[»] chr2 (24 HSPs)
chr2 (135-226)||(5958964-5959055)
chr2 (133-225)||(6974515-6974607)
chr2 (137-229)||(37060081-37060173)
chr2 (135-231)||(4382200-4382296)
chr2 (133-229)||(13274196-13274291)
chr2 (133-229)||(30609684-30609780)
chr2 (135-229)||(37140127-37140228)
chr2 (135-244)||(27004429-27004538)
chr2 (135-226)||(21423363-21423454)
chr2 (139-227)||(24475936-24476024)
chr2 (139-227)||(28107492-28107580)
chr2 (135-220)||(15070390-15070475)
chr2 (135-224)||(37802836-37802925)
chr2 (140-223)||(30393597-30393680)
chr2 (135-226)||(14786238-14786323)
chr2 (136-231)||(5807321-5807415)
chr2 (143-223)||(22194291-22194371)
chr2 (137-223)||(10217357-10217443)
chr2 (135-196)||(7747945-7748006)
chr2 (135-190)||(30757184-30757239)
chr2 (139-200)||(15431254-15431315)
chr2 (141-218)||(43022888-43022964)
chr2 (167-215)||(27404647-27404695)
chr2 (137-200)||(27969511-27969574)
[»] chr8 (18 HSPs)
chr8 (133-231)||(16655971-16656069)
chr8 (140-229)||(23403593-23403682)
chr8 (136-229)||(30204649-30204742)
chr8 (133-229)||(4623848-4623944)
chr8 (133-229)||(37629997-37630093)
chr8 (136-231)||(4234171-4234266)
chr8 (139-230)||(14842302-14842393)
chr8 (135-224)||(21567707-21567796)
chr8 (152-229)||(22798536-22798613)
chr8 (135-231)||(36470135-36470232)
chr8 (140-224)||(3001382-3001466)
chr8 (135-221)||(39436844-39436930)
chr8 (133-229)||(29958512-29958608)
chr8 (140-229)||(23275532-23275621)
chr8 (136-223)||(41787497-41787584)
chr8 (139-221)||(36046533-36046614)
chr8 (187-224)||(4414226-4414263)
chr8 (175-232)||(45310055-45310112)
[»] chr7 (8 HSPs)
chr7 (135-229)||(40337066-40337160)
chr7 (136-231)||(8163644-8163739)
chr7 (135-228)||(41326037-41326130)
chr7 (136-231)||(2362383-2362478)
chr7 (135-223)||(28089134-28089223)
chr7 (140-222)||(35589412-35589494)
chr7 (135-190)||(43403211-43403266)
chr7 (187-223)||(31637707-31637743)
[»] chr6 (11 HSPs)
chr6 (135-221)||(2814890-2814976)
chr6 (133-231)||(26393987-26394085)
chr6 (135-228)||(24640352-24640445)
chr6 (135-223)||(444522-444610)
chr6 (136-231)||(6200163-6200258)
chr6 (135-229)||(1067795-1067890)
chr6 (139-224)||(23774069-23774154)
chr6 (182-229)||(12324167-12324214)
chr6 (136-200)||(34710135-34710199)
chr6 (143-205)||(2993592-2993654)
chr6 (135-184)||(4032327-4032376)
[»] chr4 (14 HSPs)
chr4 (135-229)||(35929702-35929796)
chr4 (141-223)||(56100144-56100226)
chr4 (135-227)||(36609413-36609506)
chr4 (135-222)||(21555382-21555469)
chr4 (135-229)||(23249465-23249559)
chr4 (133-222)||(12701040-12701129)
chr4 (136-213)||(827840-827917)
chr4 (135-230)||(19598361-19598456)
chr4 (133-232)||(27733375-27733467)
chr4 (135-229)||(44243696-44243790)
chr4 (140-223)||(41842789-41842871)
chr4 (136-224)||(35749385-35749473)
chr4 (172-229)||(53584603-53584660)
chr4 (135-175)||(53583471-53583511)
[»] chr1 (16 HSPs)
chr1 (135-227)||(39001944-39002036)
chr1 (133-231)||(6750308-6750406)
chr1 (135-227)||(11121854-11121946)
chr1 (135-225)||(3695405-3695495)
chr1 (137-229)||(41998881-41998973)
chr1 (140-231)||(571640-571731)
chr1 (140-223)||(794914-794997)
chr1 (140-231)||(26653945-26654036)
chr1 (135-221)||(18808781-18808867)
chr1 (137-229)||(24909510-24909602)
chr1 (135-203)||(36290612-36290680)
chr1 (146-229)||(1585855-1585938)
chr1 (140-231)||(44272362-44272454)
chr1 (160-227)||(4792593-4792660)
chr1 (188-223)||(9224877-9224912)
chr1 (135-197)||(7409823-7409885)
[»] scaffold0302 (1 HSPs)
scaffold0302 (133-229)||(18501-18597)
[»] scaffold0121 (1 HSPs)
scaffold0121 (135-227)||(37403-37495)
[»] scaffold0025 (1 HSPs)
scaffold0025 (137-228)||(67868-67959)
[»] scaffold0140 (1 HSPs)
scaffold0140 (135-227)||(21473-21565)
[»] scaffold0532 (1 HSPs)
scaffold0532 (135-223)||(11320-11408)
[»] scaffold1248 (1 HSPs)
scaffold1248 (133-222)||(970-1059)
[»] scaffold0952 (1 HSPs)
scaffold0952 (133-222)||(1254-1343)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 41929432 - 41929233
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttac 232  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41929432 gaggactaaaactaaaacatgtaaaaggataactattgcgaaaagagaacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttac 41929333  T
Q  233 attttgtttgtgagacatcaattcaacaatttcaaagacatgaaaacctagcaaactagcaataatactctcatcactacattttgtaccttatcagtat 332  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41929332 attttgtttgtgagacatcaattcaacaatttcaaagacaagaaaacctagcaaactagcaataatactctcatcactacattttgtaccttatcagtat 41929233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 3729331 - 3729427
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3729331 gaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 3729427  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 8159068 - 8159166
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||    
T  8159068 gaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacagactctta 8159166  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 34766885 - 34766978
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  34766885 gactaaaactaaaacatgtaaaagaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacaggctct 34766978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 21583940 - 21583853
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaa 220  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  21583940 gaggactaaaactaaaacatgtaaaaagataactattatgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 9793732 - 9793828
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||||||||||||| |||||| |||||||||||  | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9793732 ggactaaaactaaaacaagtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 9793828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 21020774 - 21020686
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  21020774 gaggactaaaactaaatcatataaaaggataactattgcgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21020686  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 39508316 - 39508404
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||||||||  |||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  39508316 ggactaaaactaaaacatgtaaaagaataactattgtgagaaaaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39508404  T

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Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 20736158 - 20736251
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||  || ||||||||| |||||||||||||||||||||||| ||||    
T  20736158 ggactaaaactaaaacatgtaaaatgataactattgtgaaaggaggacttatatttttcaaaaattgaaaacaaaaactatttcaaacaagctc 20736251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 25081845 - 25081760
Alignment:
Q  146 aaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||| ||||||||||||||||| ||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25081845 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctctta 25081760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 25139814 - 25139729
Alignment:
Q  146 aaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||| ||||||||||||||||| ||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  25139814 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacaggctctta 25139729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 9913887 - 9913795
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||| ||||||||||  |||| ||| ||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  9913887 taaaactaaaacatgtaaaaagataactattatgagatgagaacttgtatatttcaaaaactaaaaacaaaaactatttcaaacatgctctta 9913795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 9793635 - 9793722
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    |||||||||||||||||||||||| |||||||||||  | ||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  9793635 ggactaaaactaaaacatgtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 9793722  T

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Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 2069050 - 2068963
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    ||||||||||||||||||||  |||| ||||| ||||| ||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  2069050 gaggactaaaactaaaacat--aaaaagataaatattgtgagaagaagactt--atatttcaaaaactgaaaacaaaaactatttcaaacag 2068963  T

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Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 20815753 - 20815668
Alignment:
Q  141 aaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggc 226  Q
    |||| ||||||| ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||| ||| ||||    
T  20815753 aaacaaaaacatataaaatgataactattgtgagaaaaggacttgtatattttaaaaactgaaaacaaaaactattttaaataggc 20815668  T

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Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 3711277 - 3711175
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttg----catatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    ||||| |||| ||||||||||||||| ||||||||||| || || || |||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  3711277 gaggattaaatctaaaacatgtaaaaagataactattgtgaaaatagaacttgtatatatatttcaaaaactgaaaacaaaaactatttcaaacatgctc 3711178  T
Q  229 tta 231  Q
    |||    
T  3711177 tta 3711175  T

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Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 41911917 - 41911850
Alignment:
Q  228 cttacattttgtttgtgagacatcaattcaacaatttcaaagacatgaaaacctagcaaactagcaat 295  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  41911917 cttacattttgattgggagacattaattcaacaatttcaaagacatgaaaacctaacaaactcgcaat 41911850  T

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Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 41910219 - 41910281
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaa 198  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||    
T  41910219 gactaaaactaaaacatgtaaaatgataactattgtgaaaagaggacttgtatattttaaaaa 41910281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 38451039 - 38451122
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||           ||||||||||||||||||||||||||||||||||    
T  38451039 ggactaaaactaaaacatgtaaaaggataactattgtgagaaggggactt-----------aaactgaaaacaaaaactatttcaaacaggctct 38451122  T

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Target: scaffold0306 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 13056 - 13152
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  13056 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggccctta 13152  T

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Target: scaffold0152 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 22271 - 22175
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  22271 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggccctta 22175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 37115885 - 37115980
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  37115885 gaggactaaaactaaaacatataaaatgataactattgcgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 37115980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 36404222 - 36404316
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  36404222 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctct 36404316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 45603075 - 45602979
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| ||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  45603075 gaggactaaaactaaaacatgtaaaaggataactattgtgataagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagactct 45602979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 29360571 - 29360475
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||    
T  29360571 ggactaaaactaaaacatgtaaaaggataactactgtgagaagaggacttgtatatttcaaaaactgaaaagaaaaattgtttcaaacaggctctta 29360475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 35534569 - 35534481
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacagg 225  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  35534569 actaaaactaaaacatataaaatgataactattgtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactattttaaacagg 35534481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 52742443 - 52742347
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  52742443 gaggattaaaactaaaatatgtaaaatgataactattgcgataagagaatttgtatatttcaaaaactggaaacaaaaactatttcaaacaggctct 52742347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 39392046 - 39391958
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||||||||||||||||||||| ||||||||||| || ||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  39392046 ggactaaaactaaaacatgtaaaaggataactattgtgaaaagaaaacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 46487358 - 46487267
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||  ||||||||||||||||||| |||||||||||||||||||||    
T  46487358 ggactaaaactaaaacatataaaatgataactattgtgagaagaagacttatatatttcaaaaactgaaaa-aaaaactatttcaaacaggct 46487267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 14201798 - 14201712
Alignment:
Q  141 aaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||||||||||||||  |||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  14201798 aaactaaaacatgtaaaagaataactattgtgaaaagaggactt--atatttcaaaaactgaaaacaaaaactatttcaaacaggctct 14201712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 48944105 - 48944191
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||| || |||| |||||||||||||||    
T  48944105 ggactaaaacaaaaacatgtaaaatgataactattgtaagaagaggacttgtatatttcaaaagctaaaaagaaaaactatttcaaa 48944191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 16353494 - 16353566
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaac 212  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  16353494 aaaactaaaacatgtaaaaggataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaac 16353566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 3618340 - 3618415
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaa 210  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||  ||||| |||||||| |||||||||||||||    
T  3618340 ggactaaaactaaaacatgtaaaaagataaatattgtgagaagaaaacttgtatatttcagaaactgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 48644608 - 48644538
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaaca 207  Q
    |||||||||||||||||||||||||||| ||||| ||||||| || ||| |||||||||||| ||||||||    
T  48644608 actaaaactaaaacatgtaaaatgataaatattgtgagaagatgatttgtatatttcaaaaattgaaaaca 48644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 54882992 - 54883065
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaa 208  Q
    ||||||||||||||||| |||||| ||||| ||||| |||||||||||||  ||||||||||||| ||||||||    
T  54882992 ggactaaaactaaaacacgtaaaaggataaatattgtgagaagaggacttctatatttcaaaaaccgaaaacaa 54883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 47599452 - 47599389
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaac 199  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||| ||||||    
T  47599452 gactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatattttaaaaac 47599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 5959055 - 5958964
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggc 226  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5959055 ggactaaaactaaaacatgtaaaaggataactattacgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 5958964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 6974515 - 6974607
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacagg 225  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  6974515 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagagcacttatatatttcaaaaactgaaaacaaaaactatttcaaacagg 6974607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 37060081 - 37060173
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  37060081 actaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 37060173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 4382296 - 4382200
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||  | |||||||||    
T  4382296 ggactaaaactaaaacatgtaaaatgataactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcttagaggctctta 4382200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 13274291 - 13274196
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  13274291 gaggactaaaactaaaacatgtaaaa-gataactattgtgagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacaggctct 13274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 30609684 - 30609780
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| ||||||||| ||||||    
T  30609684 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagaagacttgtatatttcaataactgaaaacaaaaacgatttcaaacgggctct 30609780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 37140127 - 37140228
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgat-------aactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37140127 ggactaaaactaaaacatgtaaaatgataagtgataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 37140226  T
Q  228 ct 229  Q
    ||    
T  37140227 ct 37140228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 27004538 - 27004429
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttacat 234  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||  |    
T  27004538 ggactaaaactaaaacatataaaaggataactattgtgagaagaggacttatatatttcaaaaattgaaaacaaaaactatttcaaacatgctcttagtt 27004439  T
Q  235 tttgtttgtg 244  Q
    ||| ||||||    
T  27004438 tttttttgtg 27004429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 21423454 - 21423363
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggc 226  Q
    |||||||||||||||||||||| | ||||||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  21423454 ggactaaaactaaaacatgtaataggataactattgtgagatgaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggc 21423363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 24475936 - 24476024
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||||| ||||||||||| || |||| || ||| |||||||||||||||||||||||||||||||||||||||||    
T  24475936 taaaactaaaacatgtaaaaagataactattgtgataagaagatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 24476024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 28107492 - 28107580
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||    
T  28107492 taaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaattgtttcaaacaggct 28107580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 15070390 - 15070475
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaa 220  Q
    |||||||||| ||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  15070390 ggactaaaacaaaaacatataaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 15070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 37802836 - 37802925
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    |||||||||||||||||||||||| ||||| ||||  ||||||| |||||| |||||||||||| | |||||||||||||||||||||||    
T  37802836 ggactaaaactaaaacatgtaaaaagataaatattatgagaagaagacttgtatatttcaaaaatttaaaacaaaaactatttcaaacag 37802925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 30393597 - 30393680
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||| |||||| |||   | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30393597 aaaactaaaacatgtaaaaggataaccattatcaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 30393680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 14786323 - 14786238
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggc 226  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||      ||||||||||||||||||||||||||    
T  14786323 ggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttca------gaaaacaaaaactatttcaaacaggc 14786238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 5807321 - 5807415
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||||||||||||| ||||| ||||||||||| || ||| | | ||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  5807321 gactaaaactaaaacatataaaaggataactattgtgaaaagggaatttgtatatttcaaaaactg-aaacaaaaactatttcaaacatgctctta 5807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 22194291 - 22194371
Alignment:
Q  143 actaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||||||||||||||||||||||||   | || |||||||| |||||||||||||  ||||||||||||||||||||||    
T  22194291 actaaaacatgtaaaatgataactattataaaaaaaggacttgtatatttcaaaaaccaaaaacaaaaactatttcaaaca 22194371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 10217357 - 10217443
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||||||  |||||||||   | ||| | ||||| ||||||||||||||||||| |||||||||||||||||    
T  10217357 actaaaactaaaacatgtaaaagaataactattctaaaaagggaacttgtatatttcaaaaactgaaaataaaaactatttcaaaca 10217443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 7747945 - 7748006
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaa 196  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||    
T  7747945 ggactaaaactaaaacatgtaaaatgataactcttgtaagaagaggacttgtatatttcaaa 7748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 30757184 - 30757239
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatat 190  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  30757184 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 30757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 15431315 - 15431254
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaact 200  Q
    |||||||||||||||||||| |||||||||| || ||||||||| || ||||||||||||||    
T  15431315 taaaactaaaacatgtaaaaggataactattacgggaagaggacatgtatatttcaaaaact 15431254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 43022888 - 43022964
Alignment:
Q  141 aaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttc 218  Q
    |||||||||||| ||||| ||||| ||| | |||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  43022888 aaactaaaacatataaaaggataattat-gtgagaagaggacttgtatattttaaaaactaaaaacaaaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 27404647 - 27404695
Alignment:
Q  167 attgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactat 215  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  27404647 attgtgagaagaggacttgtatatttcaaaaactaaaaacaaaaactat 27404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 27969574 - 27969511
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaact 200  Q
    ||||||| |||||||| ||||| ||||||||||| |||||| | ||||| ||||||||||||||    
T  27969574 actaaaattaaaacatataaaaggataactattgtgagaagtgaacttgtatatttcaaaaact 27969511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 16656069 - 16655971
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  16656069 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagaaggcttgtatattttaaaaactgaaaacaaaaactatttcaaacaggctctta 16655971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 23403682 - 23403593
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23403682 aaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaataggctct 23403593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 30204649 - 30204742
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  30204649 gactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctct 30204742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 4623848 - 4623944
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  4623848 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacagtctct 4623944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 37630093 - 37629997
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||    
T  37630093 gaggactaaaactaaaacatgtaaaaggctaactattgcgagaagagggcttatatatttaaaaaactgaaaacaaaaactatttcaaacaggctct 37629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 4234266 - 4234171
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||| |||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  4234266 gactcaaactaaaacatgtaaaaggctaactattgcgagaagatgacttgtatatttcaaaaactgaaaacaaaaactattttaaacaggctctta 4234171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 230
Target Start/End: Complemental strand, 14842393 - 14842302
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctt 230  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    
T  14842393 taaaactaaaatatgtaaaatgataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaattatttcaaacatgctctt 14842302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 21567796 - 21567707
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  21567796 ggactaaaactaaaacatgtaaaaagataactattgtaagaagaggatttgtatatttctaaaactgaaaacaaaaactatttcaaacag 21567707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 22798613 - 22798536
Alignment:
Q  152 tgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22798613 tgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 22798536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 36470135 - 36470232
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactg-aaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||| |||||||||| ||||||||| |||||||||    
T  36470135 ggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaaacaaaaattatttcaaagaggctctta 36470232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 3001382 - 3001466
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  3001382 aaaactaaaacatgtaaaaagataaccattgtgagaagaggacttgtatatttcaaaaactgaaaataaaaactatttcaaacag 3001466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 39436930 - 39436844
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||||||||||| |||||  |||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  39436930 ggactaaaactaaaacatataaaaaaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 29958512 - 29958608
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||| |||||||||||||||||||| |||||||||||  | |||| |||||| ||||||||||||||||||||||||| ||||| ||| |||||||    
T  29958512 gaggattaaaactaaaacatgtaaaaggataactattgtaataagatgacttgtatatttcaaaaactgaaaacaaaaattattttaaagaggctct 29958608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 23275532 - 23275621
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||  |||||||  |  | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23275532 aaaactaaaacatgtaaaagaataactaccgtaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaagaggctct 23275621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 41787584 - 41787497
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||||||| |||||||||||  ||||||| | ||  |||||| |||||||||||||||||||||||| |||||    
T  41787584 gactaaaactaaaacatgtaaaaagataactattgtaagaagagaatttatatattttaaaaactgaaaacaaaaactattttaaaca 41787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 36046533 - 36046614
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||||||||||||| ||||||||||| || |||  || ||| ||||||||||||||| |||||||||||||||||||    
T  36046533 taaaactaaaacatgtaaaaggataactattgtgaaaaggagatttgtatatttcaaaaactg-aaacaaaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 4414263 - 4414226
Alignment:
Q  187 atatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4414263 atatttcaaaaactgaaaacaaaaactatttcaaacag 4414226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 45310055 - 45310112
Alignment:
Q  175 aagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttac 232  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||| || |||||    
T  45310055 aagagaacttgtatatttcaaaaattgaaaacaaaaactatttcaaacaagcccttac 45310112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 40337066 - 40337160
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  40337066 ggactaaaactaaaacatgtaaaatgataactattgtgagaagatgacttgcatatttcgaaaactgaaaacaaaaactatttcaaacagactct 40337160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 8163644 - 8163739
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  8163644 gactaaaactaaaacatgtaaaaagataactattgtgagaagagaacttgtatatttcaaaaacagaaaacaaaaactatttcaaacagactctta 8163739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 41326130 - 41326037
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| || ||  |||||||||||||| |||||||||||||||||||||| ||||    
T  41326130 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaacatgctc 41326037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 2362383 - 2362478
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||| | |||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||||| | |||||||||| ||||||    
T  2362383 gactaaaactaaaataagtaaaatgataactattgtgagaagaagatttgtatattttaaaaactgaaaacaaaaattgtttcaaacagactctta 2362478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 28089223 - 28089134
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactg-aaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||||||||||||||||||||  |||||| || ||| ||||||||||||||| |||||||||| | |||||||||    
T  28089223 ggactaaaactaaaacatgtaaaatgataactattgtaagaagatgatttgtatatttcaaaaactgaaaaacaaaaattgtttcaaaca 28089134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 35589412 - 35589494
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    |||||||||| || ||||| ||||||||||  || ||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  35589412 aaaactaaaatatataaaaggataactattatgaaaagaggacttgtatatttcaaaaatcgaaaacaaaaactatttcaaac 35589494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 43403211 - 43403266
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatat 190  Q
    ||||||||||||||| |||||||| ||||||||||  || ||||||||||| ||||    
T  43403211 ggactaaaactaaaatatgtaaaaggataactattatgataagaggacttgtatat 43403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 31637743 - 31637707
Alignment:
Q  187 atatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  31637743 atattttaaaaactgaaaacaaaagctatttcaaaca 31637707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 2814890 - 2814976
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2814890 ggactaaaactaaaacatgtaaaatgataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 26393987 - 26394085
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  26393987 gaggactaaaactaaaacatgtaaaatgataaatattgcgagaagaagatttttatatttcaaaaactgaaaacaaaaactatttcaaagaggctctta 26394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 24640352 - 24640445
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    |||||||||||||||||| || || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24640352 ggactaaaactaaaacatatagaaggataactattatgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaagaggctc 24640445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 444610 - 444522
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  444610 ggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactattttaaaca 444522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 6200163 - 6200258
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||| |||||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  6200163 gactaaaactaaaatatgtaaaaggataactattgtgagaagagaatttgtatatttcaaaaactgaaaacaaaaaatatttcaaacaggctctta 6200258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 1067890 - 1067795
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatga-taactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||| ||||| |  ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1067890 ggactaaaactaaaacatataaaaagggtaactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaagctct 1067795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 23774154 - 23774069
Alignment:
Q  139 taaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    |||||||||||||| ||||| ||||||||||  |||||||| ||||| |||||||||||| | |||| ||||||||||||||||||    
T  23774154 taaaactaaaacatataaaaggataactattatgagaagagaacttgtatatttcaaaaattaaaaataaaaactatttcaaacag 23774069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 12324214 - 12324167
Alignment:
Q  182 cttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12324214 cttgtatatttcaaaaactgaaaacaaaaactacttcaaacaggctct 12324167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 34710199 - 34710135
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaact 200  Q
    ||||||||||||||||| |||||  ||||||| || |||||||| ||||| ||||||||||||||    
T  34710199 gactaaaactaaaacatataaaagaataactactgtgagaagagaacttgtatatttcaaaaact 34710135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 2993592 - 2993654
Alignment:
Q  143 actaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaa 205  Q
    ||||||| || ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||    
T  2993592 actaaaagatataaaaggataactattgtgagaagagaacttgtatatttcaaaaactaaaaa 2993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 4032327 - 4032376
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggactt 184  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  4032327 ggactaaaactaaaacatataaaaagataactattgtgagaagatgactt 4032376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 35929796 - 35929702
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35929796 ggactaaaactaaaacatataaaatgataactattgtgagaagaggacttatatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 35929702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 56100144 - 56100226
Alignment:
Q  141 aaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  56100144 aaactaaaacatgtaaaaggataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 56100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 36609413 - 36609506
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactg-aaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  36609413 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaaacaaaaactatttcaaacaggct 36609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 21555469 - 21555382
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  21555469 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaac 21555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 23249559 - 23249465
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| | |||||||||||||||    
T  23249559 ggactaaaactaaaacatgtaaaaggataactattgtgagaagagggcttgtatatttcaaaaaccgaaaacaaaaattgtttcaaacaggctct 23249465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 12701129 - 12701040
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    ||||||||||||||||||||||||||  ||||||||||  |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12701129 gaggactaaaactaaaacatgtaaaagaataactattgtaagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 12701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 827917 - 827840
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaact 213  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  827917 gactaaaactaaaacatgtaaaaagataactattgtgagaagaggacttgtatatttcaaaaaccgaaaacaaaaact 827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 230
Target Start/End: Complemental strand, 19598456 - 19598361
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctt 230  Q
    |||||||||||||||||||||||| || |||||||  ||||| | |||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  19598456 ggactaaaactaaaacatgtaaaaagaaaactattttgagaaaatgacttgtatatttcgaaaactgaaaacaaaaactatttcaaacagactctt 19598361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 27733467 - 27733375
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctcttac 232  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||       ||||||||||||||||||||||||||||||    
T  27733467 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagaggtcttgtatatttcaa-------aaacaaaaactatttcaaacaggctcttac 27733375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 44243696 - 44243790
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||||| |||||||| ||||| |||||||||||  |||||| |||||| |||||||||||||| |||||||||  |||||||||||||||||    
T  44243696 ggactaaaattaaaacatataaaaggataactattgtaagaagatgacttgtatatttcaaaaactaaaaacaaaatttatttcaaacaggctct 44243790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 41842871 - 41842789
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||| |||||| |||| ||||| |||| ||| ||||||||||||| |||||||||||||||||||||||    
T  41842871 aaaactaaaacatgtaaaa-gataacaattgtgagaaaaggatttgtatatttcaaaaaccgaaaacaaaaactatttcaaaca 41842789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 35749473 - 35749385
Alignment:
Q  136 gactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 224  Q
    ||||||||||||||||| ||||| ||||| ||||  ||||||| |||||| |||||||||||| |||||| ||||| ||||||||||||    
T  35749473 gactaaaactaaaacatataaaaagataattattatgagaagatgacttgtatatttcaaaaattgaaaataaaaattatttcaaacag 35749385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 53584603 - 53584660
Alignment:
Q  172 gagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  53584603 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacatgctct 53584660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 53583471 - 53583511
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgaga 175  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  53583471 ggactaaaactaaaacatgtaaaaggattactattgtgaga 53583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 39002036 - 39001944
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39002036 ggactaaaactaaaacatgtaaaaggataactattgcaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggct 39001944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 6750308 - 6750406
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||||||||| ||||||||||| || ||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6750308 gaggactaaaactaaaacatgtaaaaagataactattgtgaaaaagggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 6750406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 11121946 - 11121854
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    |||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||||||||||  |||||||||    
T  11121946 ggactaaaactaaaacatgtaaaatgataactattgtgcgaagatgacttgtatatttcaaaaactgaaaacaaaaactattataaacaggct 11121854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 3695495 - 3695405
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacagg 225  Q
    |||||||||||||||||||||||||||||||||||  || ||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  3695495 ggactaaaactaaaacatgtaaaatgataactattatgaaaaggggacttgtatatttcaaaaaccgaaaacaaaaactatttcaaacagg 3695405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 41998881 - 41998973
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||| ||||| ||||| ||||| ||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  41998881 actaaaactaaaacatataaaaagataaatattgtgagaagaagacttgtatatttcaaaaaatgaaaacaaaaactatttcaaacaggctct 41998973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 571731 - 571640
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |  ||||||||||||||||||||||||||||||||||| |||| ||||    
T  571731 aaaactaaaacatgtaaaatgataactattatgagaagaggacgtatatatttcaaaaactgaaaacaaaaactatttcaaagaggccctta 571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 794997 - 794914
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||| || ||||||||||||||||||||||||| |||||||||||    
T  794997 aaaactaaaacatgtaaaaggataactattgtgagaagaagacctgtatatttcaaaaactgaaaacaaaaaatatttcaaaca 794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 26653945 - 26654036
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||| |||||||||||||| |||||| |||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||||    
T  26653945 aaaattaaaacatgtaaaaggataaccattgtgagaagaggacctgtatatttcaaaaattgaaaacaaaaactatttcaaacaggccctta 26654036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 18808867 - 18808781
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 221  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||||||||    
T  18808867 ggactaaaactaaaacatataaaaggataactattgtgagaagaagacttgtatatttcataaactgaaaacaaaaattatttcaaa 18808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 24909510 - 24909602
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||| |||| |||||||| ||||||||||| |||||||| ||| | |||||| |||||||||||| |||||||||||||||||||||||    
T  24909510 actaaaacgaaaatatgtaaaaggataactattgtgagaagagaactagtatattttaaaaactgaaaataaaaactatttcaaacaggctct 24909602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 36290680 - 36290612
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaa 203  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  36290680 ggactaaaactaaaacatgtaaaatgataactattgtcagaagaggacttgtatatttcaaaaactgaa 36290612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 1585938 - 1585855
Alignment:
Q  146 aaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    ||||||||||||| |||||||||||  |||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacaggctct 1585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 44272362 - 44272454
Alignment:
Q  140 aaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaa-actgaaaacaaaaactatttcaaacaggctctta 231  Q
    |||||||||||||||||||| ||||| |||  || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  44272362 aaaactaaaacatgtaaaataataaccattatgaaaagagaacttgtatatttcaaaaaactgaaaacaaaaactatttcaaacaagctctta 44272454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 4792593 - 4792660
Alignment:
Q  160 gataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||    
T  4792593 gataactattgtgagaagagaacttgtatatttcaaaaactaaaaacaaaaactattttaaacaggct 4792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 9224877 - 9224912
Alignment:
Q  188 tatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    ||||||||||||||||||||||||||||||||||||    
T  9224877 tatttcaaaaactgaaaacaaaaactatttcaaaca 9224912  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 7409823 - 7409885
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaa 197  Q
    |||||||||||||||||||||||| ||||||||||  |||||||| |||   |||||||||||    
T  7409823 ggactaaaactaaaacatgtaaaaggataactattatgagaagagaactattatatttcaaaa 7409885  T

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Target: scaffold0302 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 18501 - 18597
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctct 229  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  18501 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactaaaaccaaaaactatttcaaacaggctct 18597  T

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Target: scaffold0121 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 37403 - 37495
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||    
T  37403 ggactaaaactaaaatatgtaaaatgataactattgcgagaagaggacttgtatatttcaaaaaccgaaaacaaacactatttcaaataggct 37495  T

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Target: scaffold0025 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 67959 - 67868
Alignment:
Q  137 actaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggctc 228  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  67959 actaaaactaaaacatgtaaaaggataactattgttagaagaggacttgtatattttaaaaactgaaaacaaaaattatttcaaacaggctc 67868  T

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Target: scaffold0140 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 21565 - 21473
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaacaggct 227  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| || ||  ||||||||||||||||||||||||||| |||||||||||||    
T  21565 ggactaaaactaaaacatgtaaaataataactattgtgagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttcaaacaggct 21473  T

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Target: scaffold0532 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 11408 - 11320
Alignment:
Q  135 ggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaaca 223  Q
    |||||||||| ||||||||| ||| |||||||| |  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11408 ggactaaaacaaaaacatgttaaaggataactactctgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 11320  T

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Target: scaffold1248 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 1059 - 970
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    |||||||||||||||||||| |||||  ||||||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||    
T  1059 gaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 970  T

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Target: scaffold0952 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 1254 - 1343
Alignment:
Q  133 gaggactaaaactaaaacatgtaaaatgataactattgcgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 222  Q
    |||||||||||||||||||| |||||  ||||||||| |||||| | |||||| |||||| |||||||||||||||||||||||||||||    
T  1254 gaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 1343  T

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