View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_25 (Length: 334)
Name: NF13253_low_25
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 16800859 - 16800559
Alignment:
| Q |
29 |
aaacatttagttagtaatgtttgaacggttaattaagtaagttaaaggtacaaacacaacacatcaatatatttgagagtcatcagacaaagattttaat |
128 |
Q |
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| T |
16800859 |
aaacatttagttagtaatgtttgaacggttaattaagtaagttaaaggtacaaacacaacacatcaatatatttgagagtcatcagacaaagattttaat |
16800760 |
T |
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| Q |
129 |
tgtagctagtaagaatttctagcaagtcnnnnnnnnnnnnnnnn-----ggtacaaaagttcttgtaactccatatgtggtaaaagttttaattgatgta |
223 |
Q |
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| T |
16800759 |
tgtagctagtaagaatttctagcaagtctttttttttttttttttttttggtacaaaagttcttgtaactccatatgtggtaaaagttttaattgatgta |
16800660 |
T |
|
| Q |
224 |
aaataagctttgaatttttaatataaagtgatcacataattgtatagttctaacttctacgagagnnnnnnntatggctgaatttcttcatatgacctat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16800659 |
aaataagctttgaatttttaatataaagtgatcacataattgtatagttctaacttctacgagagaaaaaaatatggctgaatttcttcatatgacctat |
16800560 |
T |
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| Q |
324 |
g |
324 |
Q |
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| T |
16800559 |
g |
16800559 |
T |
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