View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13253_low_26 (Length: 328)

Name: NF13253_low_26
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13253_low_26
NF13253_low_26
[»] chr3 (10 HSPs)
chr3 (114-328)||(1631980-1632194)
chr3 (114-328)||(1608490-1608706)
chr3 (114-263)||(1614032-1614182)
chr3 (16-118)||(1632240-1632342)
chr3 (146-328)||(1625493-1625676)
chr3 (16-118)||(10818246-10818347)
chr3 (16-118)||(1608752-1608854)
chr3 (16-118)||(1614228-1614330)
chr3 (171-293)||(10818404-10818522)
chr3 (27-118)||(1625753-1625844)
[»] chr7 (2 HSPs)
chr7 (125-328)||(18786439-18786648)
chr7 (44-118)||(18786704-18786778)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 114 - 328
Target Start/End: Complemental strand, 1632194 - 1631980
Alignment:
Q  114 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 213  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1632194 attaattctttcttgcaattgcatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgtttacaccttcacactccgcct 1632095  T
Q  214 acaaaaatttatgtatatatat-gctcatatagtagcttaattcccataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgtt 312  Q
    |||||||||||||||||||||| |    | |||  | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1632094 acaaaaatttatgtatatatatagagagtttag-ggtttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacatttgtt 1631996  T
Q  313 atatgcaacataaact 328  Q
    ||||||||||||||||    
T  1631995 atatgcaacataaact 1631980  T

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Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 114 - 328
Target Start/End: Complemental strand, 1608706 - 1608490
Alignment:
Q  114 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 213  Q
    ||||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608706 attaattctttcttgcatttgcatccactgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcct 1608607  T
Q  214 acaaaaatttatgtatatatatgctcatatag----ta--gcttaattcccataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacat 307  Q
    ||||||||||||||||||||||    ||||||    ||  | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608606 acaaaaatttatgtatatatat----atatagagtttagggtttaattctcataagtcaaaaccaaaaacaagtgaacaaaaacatcatatatcacacat 1608511  T
Q  308 ttgttatatgcaacataaact 328  Q
    |||||||||||||||||||||    
T  1608510 ttgttatatgcaacataaact 1608490  T

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Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 263
Target Start/End: Complemental strand, 1614182 - 1614032
Alignment:
Q  114 attaattctttcttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttca-ccttcacactccgcc 212  Q
    |||||||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  1614182 attaattctttcttgctattgcatccactgtctgtatctgtgtcatttttcattatcacttgcaattcattccaaacgttttcacccttcacactccgcc 1614083  T
Q  213 tacaaaaatttatgtatatatatgctcatatagtagcttaattcccataag 263  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  1614082 tacaaaaatttatgtatatatatgcacatatagtagcttaattctcataag 1614032  T

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Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1632342 - 1632240
Alignment:
Q  16 catttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattat 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1632342 catttataagcaagcttaagaatgttgctatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattgt 1632243  T
Q  116 taa 118  Q
    |||    
T  1632242 taa 1632240  T

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Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 146 - 328
Target Start/End: Complemental strand, 1625676 - 1625493
Alignment:
Q  146 tgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttcaccttcacactccgcctacaaaaatttatgtatatatatgctcatata- 244  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||||||  ||||| ||||||  || ||||||| |||||||||||||||| ||||||     
T  1625676 tgtatctgtgtcattcttcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaa-ttatgtatatatatgcacatatat 1625578  T
Q  245 gtagcttaattcccataagtcaaaaccaaaaacaagtgaacaaaaacatcatatat-cacacatttgttatatgcaacataaact 328  Q
     ||| ||||||| ||||||||||| |||||||||||| ||| ||| |||||| ||| ||||||||||||||||||||||||||||    
T  1625577 atagattaattctcataagtcaaatccaaaaacaagtcaactaaagcatcatttatacacacatttgttatatgcaacataaact 1625493  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 10818246 - 10818347
Alignment:
Q  16 catttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattat 115  Q
    |||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10818246 catttataagtaagcttatgaatgttgctatgtgaatc-acattaggacacttgtttttcttgcaataacaagtaattaggcttcaactttctgaattat 10818344  T
Q  116 taa 118  Q
    |||    
T  10818345 taa 10818347  T

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Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1608854 - 1608752
Alignment:
Q  16 catttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattat 115  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  1608854 catttataagtaagcttaagaatattgctatgtgaatccacattaagacacttgtttttcttgcaataacaagtaatttggcttcaactttctggattat 1608755  T
Q  116 taa 118  Q
    |||    
T  1608754 taa 1608752  T

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Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1614330 - 1614228
Alignment:
Q  16 catttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattat 115  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  1614330 catttataagtaagcttaagaatgttgctatgtgaatccacattagcacacttgtttttcttgcactaacaagtaatttggcttcaactttctggattat 1614231  T
Q  116 taa 118  Q
    |||    
T  1614230 taa 1614228  T

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Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 10818404 - 10818522
Alignment:
Q  171 acttgcaattcattccacacgttttcac-cttcacactccgcctacaaaaatttatgtatatatatgctcatatagtagcttaattcccataagtcaaaa 269  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||  || |||||||   |||||||| ||||||||||||    
T  10818404 acttgcaattcattccacacgttttcacacttcacactccacctacaaaaatttaagtatatat--gcacatatag---cttaattctcataagtcaaaa 10818498  T
Q  270 ccaaaaacaagtgaacaaaaacat 293  Q
    ||||||||||||||||||||||||    
T  10818499 ccaaaaacaagtgaacaaaaacat 10818522  T

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Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 1625844 - 1625753
Alignment:
Q  27 aagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 118  Q
    |||| ||||||||||  |||||||| | |||| |||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  1625844 aagcctaagaatgtttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaattattaa 1625753  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 328
Target Start/End: Complemental strand, 18786648 - 18786439
Alignment:
Q  125 cttgcaattcaatccaccgtctgtatctgtgtcatttttcattatcacttgcaattcattccacacgttttc-accttcacactccgcctacaaaaattt 223  Q
    ||||||||| ||| ||  || ||||||||||||||| ||||||||||||| || |||||| |||| |||||| ||||||||||||| |||||||||  |     
T  18786648 cttgcaattgaattcatagtttgtatctgtgtcattcttcattatcactttcagttcatttcacatgttttcaaccttcacactccacctacaaaatatc 18786549  T
Q  224 atgtat--atatatgctcatatagtagcttaattcccataagtcaaaaccaaaaa-----caagtgaacaaaaacatcatatat-cacacatttgttata 315  Q
    | ||||  |||||||| ||||   ||||||| |||  |||||||||||||||| |     ||||| ||||||| |||||| ||| |||||||||||| ||    
T  18786548 acgtataaatatatgcacata---tagcttatttcttataagtcaaaaccaaatataatccaagtcaacaaaagcatcatctatgcacacatttgtttta 18786452  T
Q  316 tgcaacataaact 328  Q
    |||||||||||||    
T  18786451 tgcaacataaact 18786439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 18786778 - 18786704
Alignment:
Q  44 tatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa 118  Q
    |||||||| | |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18786778 tatgtgaagctacatgaggacacttgtttttcttgcaataacaagtaattaggctccaactttctgaattattaa 18786704  T

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