View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_27 (Length: 301)
Name: NF13253_low_27
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 51741210 - 51740922
Alignment:
| Q |
1 |
tgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgta |
100 |
Q |
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| T |
51741210 |
tgtcagattaatgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgta |
51741111 |
T |
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| Q |
101 |
ctatcagatgtaatcaactgtgagaaaccagggaccttagacatccctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgat |
200 |
Q |
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| T |
51741110 |
ctatcagatgtaatcaattgtgagaaaccagggaccttagacatccctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgat |
51741011 |
T |
|
| Q |
201 |
tagtaatccttataccttcttttccactttctaatttaccatcaattcgttgatgcttgtgaaaaggaagaaggataattgatacttga |
289 |
Q |
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| T |
51741010 |
tagtaatccttataccttcttttccactttctaatttaccatcaattcgttgatgcttgtgaaaaggaagaaggataattgatacttga |
51740922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 289
Target Start/End: Complemental strand, 10201863 - 10201720
Alignment:
| Q |
146 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
245 |
Q |
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| T |
10201863 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
10201764 |
T |
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| Q |
246 |
ttcgttgatgcttgtgaaaaggaagaaggataattgatacttga |
289 |
Q |
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| T |
10201763 |
ttcgttgatgcttgtgaaagggaagaagaataatcgatacttga |
10201720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 10202001 - 10201914
Alignment:
| Q |
8 |
ttaatgcgagggcattttgaaattcttaggctccaagctatagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttt |
95 |
Q |
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||||| ||||||||||||||||| | |||||||||||| | |||||| || || ||||| |||||||| |||||||||||||| |||| |
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| T |
10202001 |
ttaattcgagggcattttgaaatgcgtaggctccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacatttt |
10201914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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