View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13253_low_29 (Length: 299)
Name: NF13253_low_29
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 37912942 - 37912660
Alignment:
| Q |
1 |
tattatttatttagca-gcttattttatttgtaaagaatttaagaaaattacaacactgnnnnnnnaatatattaattaaaaatgttaattttgtttatt |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37912942 |
tattatttatttagcaagcttattttatttgtaaagaatttaagaaaattacaacactttttttttaatatattaattaaaaatgttaattttgtttatt |
37912843 |
T |
|
| Q |
100 |
gatcaatttggtgtgactatgagataaaacgaccattccttgcttgattatattattaatgattggatggcttgttttattttaaatcaagttcatctat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37912842 |
gatcaatttggtgtgactatgagataaaacgaccattccttgattgattatattattaatgattggatggcttgttttattttaaatcaagttcatctat |
37912743 |
T |
|
| Q |
200 |
tactaatcatctcacacatttggattgtnnnnnnnnnnnnnnnnnntcaactcacacatttgaaggagcgggcatgcgaaagt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37912742 |
tactaatcatctcacacatttggattgtaaaaataaaaataaaaaatcaactcacacatttgaaggagcgggcatgcgaaagt |
37912660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University