View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_3 (Length: 674)
Name: NF13253_low_3
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 288 - 561
Target Start/End: Complemental strand, 36146054 - 36145781
Alignment:
| Q |
288 |
gcacgcatgtcttttaatatttccttacacgttttcaaaagcttattggaaccttatgatcactgatctaaaaactgtgtaaaagtatcttggtatggaa |
387 |
Q |
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| T |
36146054 |
gcacgcatgtcttttaatatttccttacacgttttcaaaagcttattggaaccttatgatcactgatctaaaaactgtgtaaaagtatcttggtatggaa |
36145955 |
T |
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| Q |
388 |
ctttataaaaataatcgtagacatatggaaataatctatgaactttgattattcattttttgaggtgatgaacgttgatcttctaataaatgaaaaaatt |
487 |
Q |
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| T |
36145954 |
ctctataaaaataatcgtagacatatggaaataatctatgaactttgattattcattttttgaggtgatgaacgttgatcttctaataaatgaaaaaatt |
36145855 |
T |
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| Q |
488 |
gttgaaagaggcacttgggctttgaaagataatttggacacaagagggcgacattgaatgtcttggataacaat |
561 |
Q |
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| T |
36145854 |
gttgaaagaggcacttgggctttgaaaaataatttggacacaagagggcgacattgaatgtcttggataacaat |
36145781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 36146322 - 36146135
Alignment:
| Q |
20 |
tttatattagtggttgatttgggtatttatttgtttgcttatatcacttaatagtgagtttgtgcaatatgaaagattcttgggtgctcgctcaatcaag |
119 |
Q |
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| T |
36146322 |
tttatattagtggttgatttgggtatttatttgtttgcttatatcacttaatagtgagtttgtgcaatatgaaagattcttgggtgctcgctcaatcaag |
36146223 |
T |
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| Q |
120 |
aatttctcatgcagtattcctaactggaacaataaattatatatatttctaagttgttacattgcaccgatcttttgatatattgtcc |
207 |
Q |
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| T |
36146222 |
aatttctcatgcagtattcctaactagaacaataaattatatatatttctaagttgttacattgcgcctatcttttgatatattgtcc |
36146135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 36074886 - 36074784
Alignment:
| Q |
61 |
tatcacttaatagtgagtttgtgcaatatgaaagattcttgggtgctcgctcaatcaagaatttctcatgcagtattcctaactggaacaataaattata |
160 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
36074886 |
tatcacttaatagtgagtt---gcaatatgaaagattcttgggtgcgccc-caatcaagaatttctcatgcagtattcttaactagaacaatcaattata |
36074791 |
T |
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| Q |
161 |
tatattt |
167 |
Q |
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||||||| |
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| T |
36074790 |
tatattt |
36074784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 36073754 - 36073683
Alignment:
| Q |
289 |
cacgcatgtcttttaatatttccttacacgttttcaaaagcttattggaaccttatgatcactgatctaaaa |
360 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
36073754 |
cacgcatgtcttttaatatttccttacatgtttttaaaagcttattggaaccttatgatgactgatctaaaa |
36073683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 26530814 - 26530996
Alignment:
| Q |
20 |
tttatattagtggttgatttgggtatttatttgtttgcttatatcacttaatagtgagtttgtgcaatatgaaagattcttgggtgctcgctcaatcaag |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
26530814 |
tttatgttagtggttgatttgggtatttatttgtttgcttat--cacttaatagtgagtttatgcaatatgaaagattcttggg---gtgctcagccaag |
26530908 |
T |
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| Q |
120 |
aatttctcatgcagtattcctaactggaaca-ataaattatatatatttctaagttgttac--attgcaccgatcttttgatatattg |
204 |
Q |
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|||||||||| ||||||||| |||| ||||| | |||||| |||||||||||||| |||| |||||||| ||||||| | |||||| |
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| T |
26530909 |
aatttctcatacagtattccaaactagaacagaataattatgtatatttctaagttattacatattgcacctatcttttaaaatattg |
26530996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 26531218 - 26531295
Alignment:
| Q |
393 |
taaaaataatcgtagacatatggaaataatctatgaactttgattattca-ttttttgaggtgatgaacgttgatctt |
469 |
Q |
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| T |
26531218 |
taaaagtaatcgtagacttatggaaacaatctatgaacttcgattattaatttttttgaggtgatgaacgttgatctt |
26531295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 26531087 - 26531154
Alignment:
| Q |
291 |
cgcatgtcttttaatatttccttacacgttttcaaaagcttattggaaccttatgatcactgatctaa |
358 |
Q |
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| T |
26531087 |
cgcatgtcttttaatatttccttacatgtttttaaaagcttattggaaccctataataactgatctaa |
26531154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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