View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_40 (Length: 248)
Name: NF13253_low_40
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42202570 - 42202807
Alignment:
| Q |
1 |
aattttaatctgttaattattttt-----gaaaatnnnnnnnttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaagct |
95 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42202570 |
aattttaatctgttaattatttttcttttgaaaataaaaaacttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaagct |
42202669 |
T |
|
| Q |
96 |
agtggcggtgttagtggtggcgtaacggtggtcggatcagatgctccgtcggagtatcacgtagctccgagaatagacaaccaaactccggccactggat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
42202670 |
agtggcggtgttagtggtggcgtaacggtggtcggatcagatgctccgtcggagtatcacgtagctccgagaacagacaaccaaactccgaccactggat |
42202769 |
T |
|
| Q |
196 |
cagctgttcagcttttagcggcggttcaagctggtgct |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42202770 |
cagctgttcagcttttagcggcggttcaagctggtgct |
42202807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 32060548 - 32060683
Alignment:
| Q |
38 |
ttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaagctagtggcggtgttagtggtggcgtaacggtggtcggatcagat |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
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| T |
32060548 |
ttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaggctagt------------ggtggcgttacggtggtcggatcagat |
32060635 |
T |
|
| Q |
138 |
gctccgtcggagtatcacgtagctccgagaatagacaaccaaactccg |
185 |
Q |
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|||||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
32060636 |
gctccgtcggagtaccacgtagctccaagaacagacaaccaaactccg |
32060683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 13926722 - 13926589
Alignment:
| Q |
38 |
ttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaagctagtggcggtgttagtggtggcgtaacggtggtcggatcagat |
137 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
13926722 |
ttaccagtgaagttttgagtgttat--gagttaataagtgtttgaaaacatggaggctagtggcggcgtta------------cggtggtcggatcagat |
13926637 |
T |
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| Q |
138 |
gctccgtcggagtatcacgtagctccgagaatagacaaccaaactccg |
185 |
Q |
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|||||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
13926636 |
gctccgtcggagtaccacgtagctccaagaacagacaaccaaactccg |
13926589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 12523686 - 12523819
Alignment:
| Q |
38 |
ttaccagtgaagttttgagtgttatatgagttaataagtgtttgaaaacatggaagctagtggcggtgttagtggtggcgtaacggtggtcggatcagat |
137 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
12523686 |
ttaccagtgaagttttgagtgttat--gagttaataagtgtttgaaaacatggaggctagtggcggcgtta------------cggtggtcggatcagat |
12523771 |
T |
|
| Q |
138 |
gctccgtcggagtatcacgtagctccgagaatagacaaccaaactccg |
185 |
Q |
| |
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|||||||||||||| ||||||||||| |||| |||||||||||||||| |
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| T |
12523772 |
gctccgtcggagtaccacgtagctccaagaacagacaaccaaactccg |
12523819 |
T |
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