View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_41 (Length: 247)
Name: NF13253_low_41
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 834948 - 834724
Alignment:
| Q |
3 |
gtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgt |
102 |
Q |
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| T |
834948 |
gtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaatcaaagggaatgt |
834852 |
T |
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| Q |
103 |
gattgaattgaagaataaaaggagaaattaagaagc-----tttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatact |
197 |
Q |
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| T |
834851 |
gattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcctctcctttgcaatccgtatatatact |
834752 |
T |
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| Q |
198 |
taacaatttcatcctgctccgtagcatt |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
834751 |
cgacaatttcatcctgctccgtagcatt |
834724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 813244 - 813035
Alignment:
| Q |
11 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
110 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
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| Q |
111 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatacttaacaatttcatc |
210 |
Q |
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||||||||||| ||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcctctccgttgcaatatgtatatatagtcaacaatttcatt |
813050 |
T |
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| Q |
211 |
ctgctccgtagcatt |
225 |
Q |
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||||||||||||||| |
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| T |
813049 |
ctgctccgtagcatt |
813035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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