View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13253_low_42 (Length: 244)
Name: NF13253_low_42
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 41929617 - 41929837
Alignment:
| Q |
4 |
ttttcatttgcttacataatttttgtttactagcataagcacttgtgaaattatttgaaggagtttatagaaacagttaataacatgtctatgagttgtt |
103 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41929617 |
ttttcatttgcttacatatattttttttactagcataagcacttgtgaaattatttgaaggagtttatagaaacagttaataacatgtctatgagttgtt |
41929716 |
T |
|
| Q |
104 |
tttatctattctttttcataagctcctcatgatagtttatgaaaacaacttataagtttaactccatgttatcttttgttatagattagaaatagcctaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41929717 |
tttatctattctttttcataagctcctcatgatagtttatgaaaacaacttataaatttaactccatgttatcttttgttatagattagaaatagcctaa |
41929816 |
T |
|
| Q |
204 |
atataagcacttatatgttaa |
224 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
41929817 |
atataagcacttatatgttaa |
41929837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 41912054 - 41912162
Alignment:
| Q |
1 |
ttgttttcatttgcttacataatttttgtttactagcataagcacttgtgaaattatttgaaggagtttatagaaacagttaataacatgtctatgagtt |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| |||||||||| ||| |||||||||||| ||||||||| ||||||| || |||| ||||| | || |
|
|
| T |
41912054 |
ttgtttttatttgcttacataatttta-tttactatcataagcactagtgtaattatttgaagtagtttatagcaacagtttatgacatatctataaatt |
41912152 |
T |
|
| Q |
101 |
gtttttatct |
110 |
Q |
| |
|
||||| |||| |
|
|
| T |
41912153 |
gttttcatct |
41912162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41938582 - 41938644
Alignment:
| Q |
1 |
ttgttttcatttgcttacataatttttgtttactagcataa---gcacttgtgaaattatttga |
61 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
41938582 |
ttgtttttattttcttacataatttta-tttactagcataataagcacttgtgaaattatttga |
41938644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 17258912 - 17258952
Alignment:
| Q |
116 |
ttttcataagctcctcatgatagtttatgaaaacaacttat |
156 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
17258912 |
ttttcataagctcttcaggatagtttatgaaaacagcttat |
17258952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 1404457 - 1404414
Alignment:
| Q |
117 |
tttcataagctcctcatgatagtttatgaaaacaacttataagt |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1404457 |
tttcataagctctccatgatagtttatgaaaaccacttataagt |
1404414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 28615375 - 28615334
Alignment:
| Q |
116 |
ttttcataagctcctcatgatagtttatgaaaacaacttata |
157 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
28615375 |
ttttcataagctcttcattatagcttatgaaaacaacttata |
28615334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 43985032 - 43985074
Alignment:
| Q |
116 |
ttttcataagctcctcatgatagtttatgaaaacaacttataa |
158 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
43985032 |
ttttcataagctcttcaagatagcttatgaaaacaacttataa |
43985074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 1350271 - 1350312
Alignment:
| Q |
116 |
ttttcataagctcctcatgatagtttatgaaaacaacttata |
157 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
1350271 |
ttttcataagctcttcaggatagtttatgaaaacagcttata |
1350312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University