View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13253_low_43 (Length: 242)
Name: NF13253_low_43
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40427109 - 40427335
Alignment:
| Q |
1 |
ttcgcttgttgttgatgttggtatgagaggaataagtactctcttgtggggatgctgagaaagacttgaagtatgccatatcatcaaactggaatgcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40427109 |
ttcgcttgttgttgatgttggtatgagaggaataagtactctcttgtggggattctgagaaagacttgaagtatgccatatcatcaaactggaatgcata |
40427208 |
T |
|
| Q |
101 |
tgaatccatttggtattcatgatcactaaacaaagtagtgtcctccattaatccctattaattcaaagaaaaaatggtaagtaatagaatttagaatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| |
|
|
| T |
40427209 |
tgaatccatttggtattcatgatcactaaacaaagtagtgtcctccattaatccctgttaattcaaagaaaaagagtaaggtaaaagaatttagaatttt |
40427308 |
T |
|
| Q |
201 |
tctatggatatttttgtcgttagtttt |
227 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
40427309 |
tctatggatatttttgtagttagtttt |
40427335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40442197 - 40442423
Alignment:
| Q |
1 |
ttcgcttgttgttgatgttggtatgagaggaataagtactctcttgtggggatgctgagaaagacttgaagtatgccatatcatcaaactggaatgcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40442197 |
ttcgcttgttgttgatgttggtatgagaggaataagtactctcttgtggggattctgagaaagacttgaagtatgccatatcatcaaactggaatgcata |
40442296 |
T |
|
| Q |
101 |
tgaatccatttggtattcatgatcactaaacaaagtagtgtcctccattaatccctattaattcaaagaaaaaatggtaagtaatagaatttagaatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||| |
|
|
| T |
40442297 |
tgaatccatttggtattcatgatcactaaacaaagtagtgtcctccattaatccctgttaattcaaagaaaaagagtaaggtaaaagaatttagaatttt |
40442396 |
T |
|
| Q |
201 |
tctatggatatttttgtcgttagtttt |
227 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
40442397 |
tctatggatatttttgtagttagtttt |
40442423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University