View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_49 (Length: 221)
Name: NF13253_low_49
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 4364287 - 4364095
Alignment:
| Q |
12 |
attattctgcaaatcaatgagttgcagactacttcggtagccactgctgagatttaatgtgccactaagcttgttgtccttcagtattctgttagcacat |
111 |
Q |
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| T |
4364287 |
attattctgcaaatcaatgagttgcagactacttcggtagccactgctgagatttaatgtgccactaagcttgttgtccttcagtattctgttagcacat |
4364188 |
T |
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| Q |
112 |
ttcagtaaattcacattacattcataaccatcgtttattctgtatctcataatattttgccggtatttcttcttgtttaagattatttaaaga |
204 |
Q |
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| T |
4364187 |
ttcagtaaattcacattacattcataaccatcgtttattctgtatctcataatattttgccggtatttcttcttgtttaagattatttaaaga |
4364095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 4346321 - 4346133
Alignment:
| Q |
12 |
attattctgcaaatcaatgagttgcagactacttcggtagccactgctgagatttaatgtgccactaagcttgttgtccttcagtattctgttagcacat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4346321 |
attattctgcaaatcaatgagttgcagactacttcggtagccactgctgagatttaatgtgccactaagcttgttgtccttcagtattctgttagcacat |
4346222 |
T |
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| Q |
112 |
ttcagtaaattcacattacattcataaccatcgtttattctgtatctcataatattttgccggtatttcttcttgtttaagattatttaa |
201 |
Q |
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|||||||||||||||| | ||||||||||||| ||||||| | ||| |||| | || ||||||||||||||||||||||||||||||| |
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| T |
4346221 |
ttcagtaaattcacatcatattcataaccatcatttattc-atgtcttataaaaattatccggtatttcttcttgtttaagattatttaa |
4346133 |
T |
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