View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13253_low_50 (Length: 210)
Name: NF13253_low_50
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_50 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0268 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 23134 - 22925
Alignment:
| Q |
1 |
catcccaaccaacgcgcaaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134 |
catcccaaccaacgcgcaaggaagtgctttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
23035 |
T |
|
| Q |
101 |
tttcgtagaagtgagtataacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
23034 |
ttttgtagaagtgagtataacaaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgc |
22935 |
T |
|
| Q |
201 |
gttttttcaa |
210 |
Q |
| |
|
| |||||||| |
|
|
| T |
22934 |
gctttttcaa |
22925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 10196954 - 10197163
Alignment:
| Q |
1 |
catcccaaccaacgcgcaaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10196954 |
catcccaaccaacgcgcaaggaagagcatagcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
10197053 |
T |
|
| Q |
101 |
tttcgtagaagtgagtataacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
10197054 |
tttagtagaagtgagtataacaaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgc |
10197153 |
T |
|
| Q |
201 |
gttttttcaa |
210 |
Q |
| |
|
| |||||||| |
|
|
| T |
10197154 |
gctttttcaa |
10197163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 19457645 - 19457436
Alignment:
| Q |
1 |
catcccaaccaacgcgcaaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| || | ||||||||||||||||| || |||||||| ||||| ||||||||| |||| ||| |
|
|
| T |
19457645 |
catcccaaccaacgcgcaaggaagcgcgtggcacacaaactccctttcaatttcaacagcatcacaaacaatttctttcacgcgctctgaacttagcttc |
19457546 |
T |
|
| Q |
101 |
tttcgtagaagtgagtataacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19457545 |
tttcgtagaagtgagtataacaaacaagcgaaatcacagtgcaatccttcgtcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgc |
19457446 |
T |
|
| Q |
201 |
gttttttcaa |
210 |
Q |
| |
|
| |||||||| |
|
|
| T |
19457445 |
gctttttcaa |
19457436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 25025446 - 25025655
Alignment:
| Q |
1 |
catcccaaccaacgcgcaaggaagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| || | |||||| ||||| |||| | ||||| | | ||| ||||||| | | |||||| |
|
|
| T |
25025446 |
catcccaaccaacgcgcaaggaagcgcgtcgcatacaaactccctttcaatctcaaccgcatcacgaacaatcttcaccacgcgctctgtactcagtttc |
25025545 |
T |
|
| Q |
101 |
tttcgtagaagtgagtataacaaacaagcaaaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgc |
200 |
Q |
| |
|
| || | || ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25025546 |
tgacgcaatagcgagtataacaaacaagcaaaatcacagtgtaagccttcgtcgcgtgaaataagctcgtttgagaaagttaatcccggcattaaaccgc |
25025645 |
T |
|
| Q |
201 |
gttttttcaa |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
25025646 |
gttttttcaa |
25025655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University