View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_6 (Length: 606)
Name: NF13253_low_6
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 280 - 588
Target Start/End: Original strand, 6038480 - 6038788
Alignment:
| Q |
280 |
gcattgttcacatatttatatatgatatcaatacgggacacatatttgtgtcaaaaattgttattgaatcaggggcaaatcgtgtccaaaatattaggag |
379 |
Q |
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| T |
6038480 |
gcattgttcacatatttatatatgatatcaatacgggacacatatttgtgtcaaaaattgttattgaatcagttgcaaatcgtgtccaaaatattaggag |
6038579 |
T |
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| Q |
380 |
gagtgacatgtgaattagaccataacatgataaaccaacatgatcggtgatccaattcatttttgttgttgtccatttgaggtttaagacggtgaggtga |
479 |
Q |
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| T |
6038580 |
gagtgacatgtgaattagaccataacatgataaaccaacacgatcggtgatccaattcatttttgttattgtccatttgaggtttaagacggtgaggtga |
6038679 |
T |
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| Q |
480 |
aaactcgtcatcaaatgatggaaaaaccgacaaaaaatagaacataagagaaattgaccaactcacctatgactttcttttcttatttccattctcttta |
579 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6038680 |
aaactcgtcatcaaatggtggagaaaccgacaaaaaatagaacataagagaaattgaccaactcacctatgactttcttttcttatttccattctcttta |
6038779 |
T |
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| Q |
580 |
tgatgttag |
588 |
Q |
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||||||||| |
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| T |
6038780 |
tgatgttag |
6038788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 6038287 - 6038389
Alignment:
| Q |
87 |
ctattggatctacatctaacgactcacttcacgatgtagatgttgctaggtaactaatattttactctaacaaaagtacctatactagttcaaagactct |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6038287 |
ctattggatctacatctaacgactcacttcacgatgtacatgttgctaggtaactaatattttactctaacaaaagtacctatactagttcaaagactct |
6038386 |
T |
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| Q |
187 |
caa |
189 |
Q |
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||| |
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| T |
6038387 |
caa |
6038389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6038083 - 6038167
Alignment:
| Q |
1 |
gaattaaggaaaattgtttgagattaaaattatggttgaactttggtactcagctcttggcctcacttgaattcctgttgtaacg |
85 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6038083 |
gaatcaaggaaaattgtttgagattaaaattatggttgaactttggtgctcagctcttggcctcacttgaattcctgttgtaacg |
6038167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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