View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13253_low_7 (Length: 559)

Name: NF13253_low_7
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13253_low_7
NF13253_low_7
[»] chr3 (20 HSPs)
chr3 (19-551)||(36009288-36009820)
chr3 (410-551)||(36017294-36017435)
chr3 (402-545)||(36025384-36025527)
chr3 (410-545)||(36004631-36004766)
chr3 (410-551)||(36034200-36034345)
chr3 (407-545)||(23406671-23406809)
chr3 (410-545)||(23465328-23465463)
chr3 (437-545)||(23435420-23435528)
chr3 (410-545)||(23353825-23353960)
chr3 (410-545)||(23449195-23449330)
chr3 (410-545)||(23480685-23480820)
chr3 (461-545)||(23501009-23501093)
chr3 (407-545)||(23441802-23441940)
chr3 (407-545)||(23474334-23474472)
chr3 (408-540)||(21087310-21087442)
chr3 (407-545)||(23388311-23388449)
chr3 (407-536)||(21088497-21088626)
chr3 (19-101)||(36003830-36003916)
chr3 (437-545)||(23455986-23456094)
chr3 (143-255)||(36025203-36025315)
[»] chr2 (3 HSPs)
chr2 (410-551)||(16124808-16124949)
chr2 (410-551)||(16126961-16127102)
chr2 (410-551)||(16334702-16334843)
[»] chr4 (2 HSPs)
chr4 (386-540)||(12894671-12894825)
chr4 (150-258)||(12894875-12894983)
[»] scaffold0201 (1 HSPs)
scaffold0201 (407-545)||(13499-13637)
[»] scaffold0570 (1 HSPs)
scaffold0570 (407-545)||(9703-9841)
[»] scaffold0022 (1 HSPs)
scaffold0022 (461-545)||(167593-167677)
[»] chr8 (1 HSPs)
chr8 (433-480)||(6047204-6047251)


Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Original strand, 36009288 - 36009820
Alignment:
Q  19 aatcctatcatatgaatgagagggaaagaaggttaacattcttgttgtgcagatagtaatcaaataaaatttatggtcaacatagtagagcaagacgaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36009288 aatcctatcatatgaatgagagggaaagaaggttaacattcttgttgtgcagatagtaatcaaataaaatttatggtcaacatagtagagcaagacgaac 36009387  T
Q  119 aaagaatatgtttcaaaaggaatgataatttattttacttgcctgcaatttcgatagtcccaaccagctaagttggctacttcaaaaagagcgtctttcc 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36009388 aaagaatatgtttcaaaaagaatgataatttattttacttgcctgcaatttcgatagtccgaaccagctaagttggctacttcaaaaagagcgtctttcc 36009487  T
Q  219 atttttgcaacttgtctttactatgctctaaatcttgctccctttttataaaagcttgcccagttagaacatctttccatttgtgcaagttgcttctact 318  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36009488 atttttgcaacttgtctttactatgctctaaatcttgctcccgttttataaaagtttgcccagttagaacatctttccatttgtgcaagttgcttctact 36009587  T
Q  319 aagttgcaaatcttgttcgtgttttagaaaagcttccccaaaactcccaagctgaaatctaacatccgatggatttattccgaagaatacaggtatcaca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36009588 aagttgcaaatcttgttcgtgttttagaaaagcttccccaaaactcccaagctgaaatctaacatccgatggatttattccgaagaaaacaggtatcaca 36009687  T
Q  419 atttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgcgt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36009688 atttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgtgt 36009787  T
Q  519 atgactcctcaatggctttgattagtgatgatg 551  Q
    |||||||||||||||||||||||||||||||||    
T  36009788 atgactcctcaatggctttgattagtgatgatg 36009820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 36017294 - 36017435
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || || |||||||    
T  36017294 ggtatcacaatttgtccctgatctttcttgcattctagaatcttgacgagttcattcaagcatcatttagaagaagcatagtctttcgagaatatgacta 36017393  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtgatgatg 551  Q
    ||||||| | ||||||||||||||||||||| |||| |||||    
T  36017394 tagatgcatctgactcctcaatggctttgatcagtgctgatg 36017435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 402 - 545
Target Start/End: Original strand, 36025384 - 36025527
Alignment:
Q  402 agaatacaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaa 501  Q
    |||| |||||||||||||| |||||   |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||    
T  36025384 agaaaacaggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaa 36025483  T
Q  502 gatgactatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    |||||| ||||||||  | |||| |||||| |||||||| ||||    
T  36025484 gatgacgatagatgcagacgacttctcaatagctttgatcagtg 36025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 36004631 - 36004766
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| ||||||  |||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |    
T  36004631 ggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacga 36004730  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtg 545  Q
    |||||||  | || || ||||| |||||||| ||||    
T  36004731 tagatgcagacgaatcttcaatagctttgatcagtg 36004766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 36034200 - 36034345
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| || ||   |||||| |||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||| || |||| ||    
T  36034200 ggtatcacaatctgcccatgatctttcttgcattctagaatcttgacgagttcattcaaataccattttgaagaagcatagtcttttgagaatatgaata 36034299  T
Q  510 t----agatgcgtatgactcctcaatggctttgattagtgatgatg 551  Q
    |    |||||| | ||||||||||||||||||||| |||| |||||    
T  36034300 tatagagatgcatctgactcctcaatggctttgatcagtgctgatg 36034345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 23406671 - 23406809
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| ||| ||| || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||    
T  23406671 acaggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatga 23406770  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    | |||||||| | ||||||||||||||||||||| ||||    
T  23406771 caatagatgcatgtgactcctcaatggctttgatgagtg 23406809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 23465328 - 23465463
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| ||| ||| || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||| |    
T  23465328 ggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23465427  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtg 545  Q
    ||||||| | ||||||||||||||||||||| ||||    
T  23465428 tagatgcatgtgactcctcaatggctttgatgagtg 23465463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 545
Target Start/End: Original strand, 23435420 - 23435528
Alignment:
Q  437 ttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgcgtatgactcctcaatggctt 536  Q
    |||||||||||||| ||   ||| ||||| ||||||||||||||||||||||| | || ||| |||||||| |||||||| | |||||||||||||||||    
T  23435420 ttgcattctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctt 23435519  T
Q  537 tgattagtg 545  Q
    |||| ||||    
T  23435520 tgatgagtg 23435528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 23353825 - 23353960
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| |||  || || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||| |    
T  23353825 ggtatcacaatctgttacatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23353924  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtg 545  Q
    ||||||| | ||||||||||||||||||||| ||||    
T  23353925 tagatgcatgtgactcctcaatggctttgatgagtg 23353960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 23449195 - 23449330
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| |||  || || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||| |    
T  23449195 ggtatcacaatctgttgcatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23449294  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtg 545  Q
    ||||||| | ||||||||||||||||||||| ||||    
T  23449295 tagatgcatgtgactcctcaatggctttgatgagtg 23449330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 545
Target Start/End: Original strand, 23480685 - 23480820
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    ||||||||||| ||| ||  || ||| |||||||| ||||| ||   ||| ||||||||||||||||||||||||||||| | || ||| |||||||| |    
T  23480685 ggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaagcaccattttgaagaagcatagttttctgagaagatgacaa 23480784  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtg 545  Q
    ||||||| | ||||| ||||||||||||||| ||||    
T  23480785 tagatgcatgtgacttctcaatggctttgatgagtg 23480820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 23501009 - 23501093
Alignment:
Q  461 tcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    |||||||||||||||||||| |||||||| | || ||| |||||||| |||||||| | ||||||||||||||||||||| ||||    
T  23501009 tcattcaagcaccattttgacgaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtg 23501093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 23441802 - 23441940
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| ||| ||| || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||    
T  23441802 acaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatga 23441901  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    | |||||  | | |||||||||||||||| |||| ||||    
T  23441902 caatagacacatgtgactcctcaatggctctgatgagtg 23441940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 23474334 - 23474472
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| ||| ||| || ||| |||||||| ||||| ||   ||| |||||||||||||||||||| |||||||| | || ||| |||||||    
T  23474334 acaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatga 23474433  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    | |||||  | | |||||||||||||||| |||| ||||    
T  23474434 caatagacacatgtgactcctcaatggctctgatgagtg 23474472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 540
Target Start/End: Original strand, 21087310 - 21087442
Alignment:
Q  408 caggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgac 507  Q
    ||||||||||||||||| ||  || ||| |||||||||||||| ||   ||| |||||||||||||||||||| ||||| || | || ||| |||||| |    
T  21087310 caggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtc 21087409  T
Q  508 tatagatgcgtatgactcctcaatggctttgat 540  Q
     || ||||| | |||||| ||||||||||||||    
T  21087410 aatcgatgcatgtgactcttcaatggctttgat 21087442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 23388311 - 23388449
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| |||  || || ||| |||||||  ||||| ||   ||| |||||||||||||||||||| |||||||||| || ||| |||||||    
T  23388311 acaggtatcacaatctgttgcatatatttcttgcattgaagaatcttcttgagctcattcaagcaccattttgaggaagcataattttctgagaagatga 23388410  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
      || ||  ||| ||||||||||||||||||||| ||||    
T  23388411 taattgacacgtgtgactcctcaatggctttgatgagtg 23388449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 536
Target Start/End: Original strand, 21088497 - 21088626
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| ||| ||| |  ||| ||||||||| |||| ||   ||| |||||||||||||||||||| |||||||| | || ||||||||| |    
T  21088497 acaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgaaaagataa 21088596  T
Q  507 ctatagatgcgtatgactcctcaatggctt 536  Q
    | |||||| |   |||||||||||| ||||    
T  21088597 caatagatacacgtgactcctcaatagctt 21088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 36003830 - 36003916
Alignment:
Q  19 aatcctatcatatgaatgagaggg-aaagaaggttaacattcttgttgtgcag---atagtaatcaaataaaatttatggtcaacat 101  Q
    ||||||| |||||||||| ||||| ||||||||| |||||||||||| |||||   |||||||| | ||||||||||| ||||||||    
T  36003830 aatcctaccatatgaatgggaggggaaagaaggtcaacattcttgttttgcagataatagtaattatataaaatttattgtcaacat 36003916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 545
Target Start/End: Original strand, 23455986 - 23456094
Alignment:
Q  437 ttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgcgtatgactcctcaatggctt 536  Q
    |||||||||||||| ||   ||| |||||||| ||||||||||| ||||| || | || ||| |||||||| |||||  | | |||||||||||||| ||    
T  23455986 ttgcattctagaatctttttgagatcattcaaacaccattttgaggaagcgtagttttctgagaagatgacaatagacacatgtgactcctcaatggttt 23456085  T
Q  537 tgattagtg 545  Q
    |||| ||||    
T  23456086 tgatgagtg 23456094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 36025203 - 36025315
Alignment:
Q  143 ataatttattttacttgcctgcaatttcgatagtcccaaccagctaagttggctacttcaaaaagagcgtctttccatttttgcaacttgtctttactat 242  Q
    ||||||||||||| || | || ||||| || ||| ||| |||||||| |||||  ||||    ||||| ||||||||||||||||| |||||||| || |    
T  36025203 ataatttattttatttacttgtaattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctct 36025302  T
Q  243 gctctaaatcttg 255  Q
    |||  ||||||||    
T  36025303 gcttcaaatcttg 36025315  T

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Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 16124808 - 16124949
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    |||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  16124808 ggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgacta 16124907  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtgatgatg 551  Q
    |||||||  ||||||| |||||||||||||| |||| |||||    
T  16124908 tagatgcacatgactcttcaatggctttgatcagtgctgatg 16124949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 16126961 - 16127102
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    |||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  16126961 ggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgacta 16127060  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtgatgatg 551  Q
    |||||||  ||||||| |||||||||||||| |||| |||||    
T  16127061 tagatgcacatgactcttcaatggctttgatcagtgctgatg 16127102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 410 - 551
Target Start/End: Complemental strand, 16334843 - 16334702
Alignment:
Q  410 ggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgacta 509  Q
    |||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| | || ||| ||||||||||    
T  16334843 ggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagttttctgataagatgacta 16334744  T
Q  510 tagatgcgtatgactcctcaatggctttgattagtgatgatg 551  Q
    |||||||  ||||||| |||||||||||||| |||| |||||    
T  16334743 tagatgcacatgactcttcaatggctttgatcagtgctgatg 16334702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 386 - 540
Target Start/End: Complemental strand, 12894825 - 12894671
Alignment:
Q  386 gatggatttattccgaagaatacaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaag 485  Q
    ||||||| |||| || | || ||||||||||||||||||||   |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  12894825 gatggatctatttcgtaaaaaacaggtatcacaatttgtccatgatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaggaag 12894726  T
Q  486 cataatcttttgaaaagatgactatagatgcgtatgactcctcaatggctttgat 540  Q
    |||| ||| |||| |||||||| |||||||| |||||||||||||||||||||||    
T  12894725 catagtctattgagaagatgacaatagatgcatatgactcctcaatggctttgat 12894671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 12894983 - 12894875
Alignment:
Q  150 attttacttgcctgcaatttcgatagtcccaaccagctaagttggctacttcaaaaagagcgtctttccatttttgcaacttgtctttactatgctctaa 249  Q
    |||||| || |||| ||||| || ||| ||| |||||||| |||||| ||||||  ||||| |||||||||||||| ||| | ||||| |  ||||  ||    
T  12894983 attttatttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccatttttgtaacatatctttgccgtgcttcaa 12894884  T
Q  250 atcttgctc 258  Q
    |||||||||    
T  12894883 atcttgctc 12894875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 545
Target Start/End: Original strand, 13499 - 13637
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    |||||||||||||| ||| ||| || ||| |||||||| ||||| ||   ||| ||||| |||||||||||||| |||||||| | || ||| |||||||    
T  13499 acaggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatga 13598  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    | |||||||| | ||||||||||||||||||||| ||||    
T  13599 caatagatgcatgtgactcctcaatggctttgatgagtg 13637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 545
Target Start/End: Complemental strand, 9841 - 9703
Alignment:
Q  407 acaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatga 506  Q
    ||||||||||| || ||| ||| || ||  |||||||| ||||| ||   ||| ||||| |||||||||||||| |||||||| | || ||| ||||| |    
T  9841 acaggtatcaccatctgttccatatattgcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatta 9742  T
Q  507 ctatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    | |||||||| | ||||||||||||||||||||| ||||    
T  9741 caatagatgcatgtgactcctcaatggctttgatgagtg 9703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 461 - 545
Target Start/End: Complemental strand, 167677 - 167593
Alignment:
Q  461 tcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgcgtatgactcctcaatggctttgattagtg 545  Q
    |||||||||||||||| ||| |||||||| | || ||| |||||||| |||||||| | | ||||||||||||||||||| ||||    
T  167677 tcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtg 167593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 6047204 - 6047251
Alignment:
Q  433 ttttttgcattctagaattttgacgagttcattcaagcaccattttga 480  Q
    |||||||||||| || ||||||| |||||||||||||||||| |||||    
T  6047204 ttttttgcattcaagtattttgaggagttcattcaagcaccactttga 6047251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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