View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13253_low_8 (Length: 537)
Name: NF13253_low_8
Description: NF13253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13253_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 41653779 - 41653385
Alignment:
| Q |
17 |
atcatcagttcctacaaccatgagaggatgtctcacatccattgtacagcagagatcagggagttgctgagtatgcactggattttgctgcctagtatcc |
116 |
Q |
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| T |
41653779 |
atcagcagttcctacaaccatgagaggatgtctcacatccattgtacagcagagatcagggagttgctgagtatgcactggattttgctgcctagtatcc |
41653680 |
T |
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| Q |
117 |
caatacctaataaacacaaaataatttgtgaaatgacccaagactctttggacg---------------aataaaaagaatgaatatgcatacttaatgg |
201 |
Q |
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| T |
41653679 |
caatacctaacaaacataaaataa----------gacccaatactctttagacgtacgtacggtaactgaatgaaaagaatgaatatgcatgcttaatgg |
41653590 |
T |
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| Q |
202 |
ttttgtcccagcttcctgtggccaaaacattcatctctggtatccatgcaatctctttgacgggaccatcatgcacggcaacagtcgtcggttgccctcc |
301 |
Q |
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| T |
41653589 |
ttttgtcccagcttcctgtggccaaaacattcatctctggtatccatgcaatctctttgatgggaccatcatgcacggcaacagtcgtcggttgccctcc |
41653490 |
T |
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| Q |
302 |
agataaaagtggccacatcttgacctgcttgtcacaacctccggtaaaaacagttgttccatcatccttccaagcagagcacaaaacctacaaccaatgc |
401 |
Q |
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| T |
41653489 |
agataaaagtggccacatcttgacctgcttgtcacaacttccggtaaaaacagttgttccatcatccttccaagcagagcacaaaacctacaaccaatgc |
41653390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 439 - 518
Target Start/End: Complemental strand, 41653381 - 41653304
Alignment:
| Q |
439 |
attaagtacaacaataacaacaatgtagatacatttgaattactttgtgattatagaaaagcatgcatgcatgtattaat |
518 |
Q |
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| T |
41653381 |
attaagtacaacaataacaacaatgtagataca-ttgaattac-ttgtgattatagaaaagcatgcatgcatgcattaat |
41653304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 170 - 395
Target Start/End: Original strand, 28819622 - 28819847
Alignment:
| Q |
170 |
gaataaaaagaatgaatatgcatacttaatggttttgtcccagcttcctgtggccaaaacattcatctctggtatccatgcaatctctttgacgggacca |
269 |
Q |
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| T |
28819622 |
gaataaaaagaataaaattgcatactttacagttttgtccaagcttccagtggctaaaagactcatctccggtatccatgcaatctctttaatgggagca |
28819721 |
T |
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| Q |
270 |
tcatgcacggcaacagtcgtcggttgccctccagataaaagtggccacatcttgacctgcttgtcacaacctccggtaaaaacagttgttccatcatcct |
369 |
Q |
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| T |
28819722 |
tcatgcatagcaacagtcaccggttgccctccagacaaaagcggccacatcttagcctgcttatcacaacctccagaaaacactgtcgttccatcatctt |
28819821 |
T |
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| Q |
370 |
tccaagcagagcacaaaacctacaac |
395 |
Q |
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| T |
28819822 |
tccaagctgagcacaaaaccttcaac |
28819847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 28818079 - 28818183
Alignment:
| Q |
22 |
cagttcctacaaccatgagaggatgtctcacatccattgtacagcagagatcagggagttgctgagtatgcactggattttgctgcctagtatcccaata |
121 |
Q |
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||||||| |||||||| |||||||||||||| ||||||| | || ||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
28818079 |
cagttcccacaaccatcagaggatgtctcactgacattgtataacatcgatcagggagttgttgagtatgcactgggttggattgcctagtatcccaata |
28818178 |
T |
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| Q |
122 |
cctaa |
126 |
Q |
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||||| |
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| T |
28818179 |
cctaa |
28818183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 204 - 391
Target Start/End: Original strand, 1464150 - 1464337
Alignment:
| Q |
204 |
ttgtcccagcttcctgtggccaaaacattcatctctggtatccatgcaatctctttgacgggaccatcatgcacggcaacagtcgtcggttgccctccag |
303 |
Q |
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|||||||||||||||||||| |||| |||||||| || ||||| ||||| ||||||| || |||| |||| ||| ||||| | ||||| ||||||| |
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| T |
1464150 |
ttgtcccagcttcctgtggctaaaaggttcatctcgggaatccaagcaatatctttgataggtgcatcgtgcatggctacagtaattggttgtcctccag |
1464249 |
T |
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| Q |
304 |
ataaaagtggccacatcttgacctgcttgtcacaacctccggtaaaaacagttgttccatcatccttccaagcagagcacaaaaccta |
391 |
Q |
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| T |
1464250 |
acaacagaggccacattttaacttgcttgtcacatccaccagagaagacagttgtgccatcatccttccaagcagagcacaaaaccta |
1464337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 1463572 - 1463665
Alignment:
| Q |
33 |
accatgagaggatgtctcacatccattgtacagcagagatcagggagttgctgagtatgcactggattttgctgcctagtatcccaatacctaa |
126 |
Q |
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| T |
1463572 |
accatcagaggatgtttcactgtcattgcatagcagcgctctgggagttgttgtgtgtgcactggatttggctgccttgtatcccaatacctaa |
1463665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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