View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_100 (Length: 253)
Name: NF13254_high_100
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 23471456 - 23471246
Alignment:
| Q |
18 |
tcaagttggtctatagatcaataatgctgataagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatccatattgca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23471456 |
tcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatccatattgca |
23471357 |
T |
|
| Q |
118 |
cataacttgttagtatttctgttgtatagtaagatttatattcttcaatatgataacatattttccttgttttgtgctacgaggcactgacacatacgcg |
217 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
23471356 |
cataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactgacacataag-g |
23471258 |
T |
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| Q |
218 |
gacaccggacac |
229 |
Q |
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|||||||||||| |
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| T |
23471257 |
gacaccggacac |
23471246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 23435970 - 23435760
Alignment:
| Q |
18 |
tcaagttggtctatagatcaataatgctgataagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatccatattgca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23435970 |
tcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacatatcaagcatgacaaatcttggtgatccatattgca |
23435871 |
T |
|
| Q |
118 |
cataacttgttagtatttctgttgtatagtaagatttatattcttcaatatgataacatattttccttgttttgtgctacgaggcactgacacatacgcg |
217 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
23435870 |
cataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactgacacataag-g |
23435772 |
T |
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| Q |
218 |
gacaccggacac |
229 |
Q |
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|||||||||||| |
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| T |
23435771 |
gacaccggacac |
23435760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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