View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_104 (Length: 250)
Name: NF13254_high_104
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_104 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 35252606 - 35252826
Alignment:
| Q |
11 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252606 |
cagagacatttactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
35252705 |
T |
|
| Q |
111 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252706 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
35252805 |
T |
|
| Q |
211 |
acttactatttatgcaaccac |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35252806 |
acttactatttatgcaaccac |
35252826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 35240354 - 35240574
Alignment:
| Q |
11 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
35240354 |
cagagacattaactagaacttcatttccatatcttcaccacagaattactgctagctgatgcaatatcgaattcacttcgcgctgtagtagctgctagtc |
35240453 |
T |
|
| Q |
111 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
210 |
Q |
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||||||||||||||||||||||| |||||||| ||||| ||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35240454 |
cagtaattaatacatcagaggcatctcctttagtacgtatttccctggtctcaacagtcaacaattccaagcactgcaataagttgtccacagattattt |
35240553 |
T |
|
| Q |
211 |
acttactatttatgcaaccac |
231 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35240554 |
acttactatttatgcaaccac |
35240574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35245818 - 35246027
Alignment:
| Q |
11 |
cagagacattaactagaacttcatttccatatcttcaccacagaatcactgctagctgatgcaatattgaattcacttcgcgccgtagtagctgctagtc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||| |||||||||| |||||||||| ||||||| | ||||||||||| |
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| T |
35245818 |
cagagacattaactagaatttcatttccatagcttcaccatagaatcagtgctagcggatgcaatatggaattcactttgcgccgttgaagctgctagtc |
35245917 |
T |
|
| Q |
111 |
cagtaattaatacatcagaggcacctcctttattacgtcttttctcagtctcaagaatcaacaattccaagcactgcaataagttgtccacagattattt |
210 |
Q |
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|||||||| ||| ||||||||||| |||||||||| ||||| | | |||||| ||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
35245918 |
cagtaattgatatatcagaggcacttcctttattaaatctttgcccgttctcaataatcaaccattccaagcactgcaataagttgtccgaagattattt |
35246017 |
T |
|
| Q |
211 |
acttactatt |
220 |
Q |
| |
|
||||| |||| |
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| T |
35246018 |
acttaatatt |
35246027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 35270037 - 35270105
Alignment:
| Q |
159 |
tctcaagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
227 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||| |||| ||||||||||| || ||||||||| |
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| T |
35270037 |
tctcaagaatcaacaattccaggcactgtaataaattgtacacatattatttactttctctttatgcaa |
35270105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 35277094 - 35277159
Alignment:
| Q |
162 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
227 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||| |||||||||||||||| | || ||||||| |
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| T |
35277094 |
caagagtcaacaattccatgccctgcaataaattgtacacagattatttactttccatctatgcaa |
35277159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 35285852 - 35285893
Alignment:
| Q |
12 |
agagacattaactagaacttcatttccatatcttcaccacag |
53 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||| |
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| T |
35285852 |
agagacatcaactagaacttcatttccatatgttcaccacag |
35285893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 35269914 - 35269958
Alignment:
| Q |
27 |
aacttcatttccatatcttcaccacagaatcactgctagctgatg |
71 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
35269914 |
aacttcatctccatatcttcaccacagaatcatcgctagctgatg |
35269958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 35274830 - 35274873
Alignment:
| Q |
159 |
tctcaagaatcaacaattccaagcactgcaataagttgtccaca |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||| |
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|
| T |
35274830 |
tctcaagaatcaacatttccaagcactgcaataaattgtacaca |
35274873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 35282681 - 35282746
Alignment:
| Q |
162 |
caagaatcaacaattccaagcactgcaataagttgtccacagattatttacttactatttatgcaa |
227 |
Q |
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||||| || ||||||||| |||||||||||| |||| ||||||||| || ||| | |||||||||| |
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| T |
35282681 |
caagagtccacaattccatgcactgcaataaattgtacacagattagttgctttccatttatgcaa |
35282746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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