View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_108 (Length: 245)
Name: NF13254_high_108
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_108 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 6249265 - 6249053
Alignment:
| Q |
18 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
117 |
Q |
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| T |
6249265 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
6249166 |
T |
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| Q |
118 |
aagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249165 |
aagccttcaaaattaaagggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
6249066 |
T |
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| Q |
218 |
ctatctctctgtg |
230 |
Q |
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||||||||||||| |
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| T |
6249065 |
ctatctctctgtg |
6249053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 43047421 - 43047209
Alignment:
| Q |
18 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43047421 |
ctttgttgtacatatcgagtagaagatcttgcatagatctaagacagtggcatttgaaactgatggaattctctgttttacatagacaacaatggaagct |
43047322 |
T |
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| Q |
118 |
aagccttcaaaattaaaaggagaatatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43047321 |
aagccttcaaaattaaaaggagaatatggatgaaatgaaatgaaggagatggatcacatgatttgtattcttcattttttctaaagagtgataccatagt |
43047222 |
T |
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| Q |
218 |
ctatctctctgtg |
230 |
Q |
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|| |||||||||| |
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| T |
43047221 |
ctgtctctctgtg |
43047209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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