View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_11 (Length: 637)
Name: NF13254_high_11
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 50 - 299
Target Start/End: Original strand, 11829955 - 11830204
Alignment:
| Q |
50 |
aaatatatgttggtgagaaatgatatttgtacaatgg-ataacttttagacaactaactgataaggtgaaaaccttatgcaagtcttaaaagctgtcata |
148 |
Q |
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| T |
11829955 |
aaatacatgttggtgagaaatgatatttgtacaatgggataacttttagacaactaactgataaggtgaaaaccttctgcaagtcttaaaagctgtcata |
11830054 |
T |
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| Q |
149 |
tatgcccacaaactttttaaaccaatcctacctaaaagaagccactgttttctcaagagtttgttttaatcgacgatttgacacttctacttacaattac |
248 |
Q |
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| T |
11830055 |
tatgcccacaaactttttaaaccaatccttcctaaatgaagccactgttttctcaagaatttgttttaatcgacgatttgacacttctacttacaattac |
11830154 |
T |
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| Q |
249 |
attagacaatccgttgcaacagaacatgggcactacatttgtcctttatta |
299 |
Q |
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| T |
11830155 |
attagacaactcgttgcaacagaacatgggcac-acatttgtccttcatta |
11830204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 312 - 610
Target Start/End: Original strand, 11831944 - 11832230
Alignment:
| Q |
312 |
ggagcgtcagacatataaaaatttgtgttaaatggtgaccatgcctaaagtaaagactgtgagtaagtcttggcatttttaaccatataaaggcatatga |
411 |
Q |
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| T |
11831944 |
ggagcgccagacatataaaaatctgtgttaaatg-tgacaatacctaaagtaaagactatgagtaagtcttggcatttttaaccgtataaaggcatatga |
11832042 |
T |
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| Q |
412 |
gtaatgagaaaccaaagtttaatagacaaaaacatatatgtttgaaacacaattacacaaaataaaatggaagagaaggggaattgttgatgagatcaat |
511 |
Q |
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| T |
11832043 |
gtaatgagaaaccaaagt-----------aaacatatatttttgaaacacaattacacaaaataaaatggaagagaagggaatttgttgatgagatcaat |
11832131 |
T |
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| Q |
512 |
aattacattttttcagggagatcaataatcacacgttgtcggtgattctggatgaataaatgacatatttgagttttaattctccatatttaaagaact |
610 |
Q |
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| T |
11832132 |
aactacatttttcgggggagatcaataattacacgttgtcggtgattctaggtgaataaatgacatatttgagttttaattctccatattcagagaact |
11832230 |
T |
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