View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_high_113 (Length: 235)

Name: NF13254_high_113
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_high_113
NF13254_high_113
[»] chr6 (9 HSPs)
chr6 (1-220)||(11133216-11133435)
chr6 (1-220)||(11196945-11197164)
chr6 (1-220)||(11156492-11156711)
chr6 (1-220)||(11200110-11200333)
chr6 (1-220)||(11276176-11276395)
chr6 (1-171)||(11170792-11170962)
chr6 (9-179)||(11241214-11241384)
chr6 (1-220)||(11209614-11209833)
chr6 (1-220)||(11161359-11161590)
[»] scaffold1207 (1 HSPs)
scaffold1207 (22-220)||(1128-1326)
[»] chr7 (3 HSPs)
chr7 (9-140)||(39985876-39986007)
chr7 (13-191)||(8017169-8017347)
chr7 (52-140)||(8581973-8582061)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11133216 - 11133435
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11133216 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctag 11133315  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11133316 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgt 11133415  T
Q  201 caataccattgatgatattt 220  Q
    ||||||||||||||||||||    
T  11133416 caataccattgatgatattt 11133435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11196945 - 11197164
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||| |  ||||||||||| ||||||| ||    
T  11196945 ttaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgag 11197044  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgt 200  Q
    | |  |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| || || ||    |||||||     
T  11197045 tggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgc 11197144  T
Q  201 caataccattgatgatattt 220  Q
    ||||||||| ||||| ||||    
T  11197145 caataccatcgatgagattt 11197164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11156492 - 11156711
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||| |  ||||||||||| ||||||   |    
T  11156492 ttaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttggg 11156591  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgt 200  Q
    | |  |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||    |||||||     
T  11156592 tggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgc 11156691  T
Q  201 caataccattgatgatattt 220  Q
    ||||||||| ||||| ||||    
T  11156692 caataccatcgatgagattt 11156711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11200110 - 11200333
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| ||||| |  |||||| |||| ||||||| ||    
T  11200110 ttaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaag 11200209  T
Q  101 tagcttgg----cgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaattt 196  Q
    |||  |||    ||||| || ||||||||||| | ||| ||| ||||||| ||||||||||||||||||||||||||| |||| ||||| || |  ||||    
T  11200210 tagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccattt 11200309  T
Q  197 ttgtcaataccattgatgatattt 220  Q
    ||||||||||||| ||||| ||||    
T  11200310 ttgtcaataccatggatgagattt 11200333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11276176 - 11276395
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| |||||| ||| ||  |||||||||||||||||||| |||||||| || ||||||||||||||||| || |  |||||| |||| ||||||| ||    
T  11276176 ttaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgag 11276275  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgt 200  Q
    |||  ||||| || |||||||||||||| ||||| ||||||||||| ||||||| ||||||| |||||||| |  ||||||| || || || ||||| |     
T  11276276 tagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgc 11276375  T
Q  201 caataccattgatgatattt 220  Q
    ||||||||| ||||| ||||    
T  11276376 caataccatggatgagattt 11276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 11170792 - 11170962
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| ||||||  |||||| |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| |  |||||| |||| ||||||| ||    
T  11170792 ttaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgag 11170891  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaagg 171  Q
    |||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||| |||||||||||    
T  11170892 tagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaagg 11170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 11241384 - 11241214
Alignment:
Q  9 tttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttgg 108  Q
    |||| ||| ||| ||||||||||||||| |||| ||||||||  ||||||||| || ||| ||||| |  |||||| |||| ||||||| | |||  |||    
T  11241384 tttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactgg 11241285  T
Q  109 cgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttc 179  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  11241284 cgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttc 11241214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11209614 - 11209833
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctag 100  Q
    ||||| |||||| || |||  |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| |  |||||| |||| ||||||| ||    
T  11209614 ttaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgag 11209713  T
Q  101 tagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgt 200  Q
    |||  |||||||| |||||||||||||| ||||| ||||||||||| ||||| | |||||||||||||||| |  |||||||  | || || ||||| |     
T  11209714 tagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgc 11209813  T
Q  201 caataccattgatgatattt 220  Q
    ||||||||| ||||| ||||    
T  11209814 caataccatggatgagattt 11209833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 11161359 - 11161590
Alignment:
Q  1 ttaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgt--------tgattattcgcataacgttgagacgtgcaataacacctgc 92  Q
    ||||| |||||| ||||||||||||||||||||||| |||| ||||||| ||        |||||| ||||||||| || || |   ||||| |||| ||    
T  11161359 ttaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgc 11161458  T
Q  93 atctctagtagcttggcgt----tgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttc 188  Q
    ||||| |||||  ||||||    || ||  |||||||||| | ||| ||| ||||||| ||||||||||||||||||||||||||| |||| ||||| ||    
T  11161459 atctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctc 11161558  T
Q  189 acgaatttttgtcaataccattgatgatattt 220  Q
     |  ||||||||||||||||| ||||| ||||    
T  11161559 gcccatttttgtcaataccatggatgagattt 11161590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 1128 - 1326
Alignment:
Q  22 ccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcat 121  Q
    |||||||||||||||||||| |||||||| |||| ||||| || ||| ||||| |  |||||| |||||||||||| ||||| ||||||||| |||||||    
T  1128 ccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcat 1227  T
Q  122 taaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgtcaataccattgatgatattt 220  Q
    ||||||| ||||| ||||||||||| ||||||| |||||||||||||||| |  |||||||  | || || ||||| | ||||||||| ||||| ||||    
T  1228 taaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagattt 1326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 39985876 - 39986007
Alignment:
Q  9 tttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttgg 108  Q
    |||||||||||||||||| ||||| ||||| || || ||||| ||||| |||||||| || || ||||  |||||||| || |||||  | ||||||||     
T  39985876 tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga 39985975  T
Q  109 cgttgcgagtcattaaagtaagcaggaacagt 140  Q
    || || |||||||||||||||||||| |||||    
T  39985976 cgctgggagtcattaaagtaagcagggacagt 39986007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 8017347 - 8017169
Alignment:
Q  13 ttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgtt 112  Q
    |||||||| || || ||||| || || ||||| ||||||||||| |||| || ||| ||||| | |||||| ||||| |||||  | || ||||| || |    
T  8017347 ttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgct 8017248  T
Q  113 gcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacg 191  Q
    |||| ||||| |||||||| ||||| || | |||| ||| |||||| ||||| || |||||| |||| ||||| |||||    
T  8017247 gcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacg 8017169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 8581973 - 8582061
Alignment:
Q  52 ttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagt 140  Q
    |||||||| ||||| || ||||||| ||||||  ||||||||||| |||| |||   ||||| || |||||||| |||||||| |||||    
T  8581973 ttgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagt 8582061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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