View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_high_12 (Length: 628)
Name: NF13254_high_12
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_12 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 11526571 - 11527168
Alignment:
| Q |
19 |
tcataattgcagtcaatatttgtgaaaggtacgcaaatccttgatgggtttcatgtcaccaatgaggttattgttgaggctcttaagttgaaaaaagaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11526571 |
tcataattgcagtcaatatttgtgaaaggtacgcaaattcttgatgggattcatgtcaccaatgaggttattgttgaggctcttaagttgaaaaaagaat |
11526670 |
T |
|
| Q |
119 |
ttatgttgtttaaattggattttgaaaaagcatatcattctattgattagggtatttaaatgttgtttttggtaaaatgcagtttttgattctttggagg |
218 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
11526671 |
ttatgttgtttaaattggattttgaaaaagcgtatcattctattgattgaggtatttaaatgttgttatgggtaaaatgcagtttctggttctttggagg |
11526770 |
T |
|
| Q |
219 |
aaatggatgaaaacatgtataagtgcgacaacatcttatattttggtgcatggtagtcctaaagaagaatttttgttggagagagggttaaggtaggggg |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
11526771 |
aaatggatgagaacatgtataagtgcgacaacatcttatattttggtgcatggtagtcctacagaagaattttagttggagagagggttaaggtaggggg |
11526870 |
T |
|
| Q |
319 |
accctctatctccttttctatttatcttgactgtaaaaggtttgcatgtcatgatgaaggtaatgggtgagaataatattatgttggttggagttaaagt |
418 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
11526871 |
accctctatctccttttctatttatgttgactgtaaaaagtttgcatgtcatgatgaaggcaatgggtgagaataatattatgttggttggagtgaaagt |
11526970 |
T |
|
| Q |
419 |
caatatttcctggttgaaagaggctatctcggttatgaattgatgggttgagcagttgccctttgtgtatctaggtcttagtaggt-gacattcacatca |
517 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||| || ||||||| | |||||||||| |
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|
| T |
11526971 |
caatatttcctggttcaaagaggatatctcggttatgaattgatgtgttgagcagtttcccttt-tgtatctaggcctcagtaggtcgggattcacatca |
11527069 |
T |
|
| Q |
518 |
tttaaatctttgggatttgttgcttgcctgtattaaggcaagattgtcaaggtggaagcgtaagaagttatcttttggttggtcgattgattctcccta |
616 |
Q |
| |
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||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
11527070 |
tttaaatttttgggatatgttgcatgcctgtattaaggcaagattgtcagggtggaagagtaagaatttatcttttggttggtcggttgattctcccta |
11527168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Complemental strand, 11465770 - 11465171
Alignment:
| Q |
19 |
tcataattgcagtcaatatttgtgaaaggtacgcaaatccttgatgggtttcatgtcaccaatgaggttattgttgaggctcttaagttgaaaaaagaat |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11465770 |
tcataattgaagtcaatatttgtgaaaggtacgcaaatccttgatgggactcatgtcaccaatgaggttattgttgaggctcttaagttgaaaaaagaat |
11465671 |
T |
|
| Q |
119 |
ttatgttgtttaaattggattttgaaaaagcatatcattctattgattagggtatttaaatgttgtttttggtaaaatgcagtttttgattctttggagg |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||| || ||||||||||| |
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|
| T |
11465670 |
ttatgttgtataaattggattttgaaaaagcgtatcattctattgattagggtattcaaatgttgttatgggtaaaatgcagtttctggttctttggagg |
11465571 |
T |
|
| Q |
219 |
aaatggatgaaaacatgtataagtgcgacaacatcttatattttggtgcatggtagtcctaaagaagaatttttgttggagagagggttaaggtag-ggg |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||| ||| |
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|
| T |
11465570 |
aaatggatgaaaacatgtataagcgcgacaacatcttatattttggtgtgtggtagtcctacaaaagaattttggttggagagagggttaaggtaggggg |
11465471 |
T |
|
| Q |
318 |
gaccctctatctccttttctatttatcttgactgtaaaaggtttgcatgtcatgatgaaggtaatgggtgagaataatattatgttggttggagttaaag |
417 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11465470 |
gaccctctgtctccttttctatttatgttgactgtaaaaggtttgcatgtcatgatgaaggcaatgggtgagaataatattatgttggttggagtgaaag |
11465371 |
T |
|
| Q |
418 |
tcaatatttcctggttgaaagaggctatctcggttatgaattgatgggttgagcagttgccctttgtgtatctaggtcttagtaggt-gacattcacatc |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| | ||||||||| |
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|
| T |
11465370 |
tcaatatttcctagttgaaagaggctatctcggttatgaattgatgtgttgagcagttgccctttgtgtatctaggcctcagtaggtggggattcacatc |
11465271 |
T |
|
| Q |
517 |
atttaaatctttgggatttgttgcttgcctgtattaaggcaagattgtcaaggtggaagcgtaagaagttatcttttggttggtcgattgattctcccta |
616 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
11465270 |
atttaaatttttgggatatgttgcttgcctgtattaaggcaagattgtcagggtggaagagtaagaatttatcttttggttggtcggttgattctcccta |
11465171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 19649278 - 19649211
Alignment:
| Q |
79 |
aatgaggttattgttgaggctcttaagttgaaaaaagaatttatgttgtttaaattggattttgaaaa |
146 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
19649278 |
aatgaggttgtcgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaa |
19649211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 45994161 - 45994092
Alignment:
| Q |
77 |
ccaatgaggttattgttgaggctcttaagttgaaaaaagaatttatgttgtttaaattggattttgaaaa |
146 |
Q |
| |
|
||||||| ||| ||| |||||||| ||| |||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
45994161 |
ccaatgaagttgttgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaa |
45994092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 37938947 - 37939051
Alignment:
| Q |
122 |
tgttgtttaaattggattttgaaaaagcatatcattctattgattagggtatttaaatgttgtttttggtaaaatgcagtttttgattctttggaggaaa |
221 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||| ||| | |||| |||| |||||| || |||| | || | |||| |||||||| ||||||||||||| |
|
|
| T |
37938947 |
tgttatttaaagtggattttgaaaaagcttatgattttgttgactaggttatttagattttgtgatggggagaatgtcgtttttgactctttggaggaaa |
37939046 |
T |
|
| Q |
222 |
tggat |
226 |
Q |
| |
|
||||| |
|
|
| T |
37939047 |
tggat |
37939051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 34207889 - 34207843
Alignment:
| Q |
103 |
aagttgaaaaaagaatttatgttgtttaaattggattttgaaaaagc |
149 |
Q |
| |
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||||||||||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
34207889 |
aagttgaaaaaagaattgttattgtttaaagtggattttgaaaaagc |
34207843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 4986622 - 4986689
Alignment:
| Q |
79 |
aatgaggttattgttgaggctcttaagttgaaaaaagaatttatgttgtttaaattggattttgaaaa |
146 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
4986622 |
aatgaggttgtcgatgaggctcgtaaaaagaaaaaagaacttatgttgtttaaagtggattttgaaaa |
4986689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 1307248 - 1307294
Alignment:
| Q |
103 |
aagttgaaaaaagaatttatgttgtttaaattggattttgaaaaagc |
149 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||| |
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|
| T |
1307248 |
aagttgaaaaaagaattgttattgtttaaagtggattttgaaaaagc |
1307294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 21550387 - 21550338
Alignment:
| Q |
121 |
atgttgtttaaattggattttgaaaaagcatatcattctattgattaggg |
170 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
21550387 |
atgttatttaaagtggattttgaaaaagcatatgattctgttgactaggg |
21550338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 34830946 - 34830904
Alignment:
| Q |
109 |
aaaaaagaatttatgttgtttaaattggattttgaaaaagcat |
151 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
34830946 |
aaaaaagaattgatgttgtttaaagttgattttgaaaaagcat |
34830904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 30165923 - 30165972
Alignment:
| Q |
122 |
tgttgtttaaattggattttgaaaaagcatatcattctattgattagggt |
171 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
30165923 |
tgttgtttaaggtcgattttgaaaaagcatatgattctattgattggggt |
30165972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 8131556 - 8131464
Alignment:
| Q |
79 |
aatgaggttattgttgaggctcttaagttgaaaaaagaatttatgttgtttaaattggattttgaaaaagcatatcattctattgattagggt |
171 |
Q |
| |
|
||||||||| | | |||||||| |||| ||||| ||||| || |||||||| |||||||||| ||||| ||| ||||| ||||||||||| |
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|
| T |
8131556 |
aatgaggttgtggatgaggctcgtaagactaaaaaggaattgttgatgtttaaagtggattttgagaaagcgtatgattctgttgattagggt |
8131464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 3152400 - 3152446
Alignment:
| Q |
103 |
aagttgaaaaaagaatttatgttgtttaaattggattttgaaaaagc |
149 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
3152400 |
aagttgaaaaaagaattgttattgtttaaagtggattttgaaaaagc |
3152446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 62888 - 62937
Alignment:
| Q |
109 |
aaaaaagaatttatgttgtttaaattggattttgaaaaagcatatcattc |
158 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||||||||||||||| |||| |
|
|
| T |
62888 |
aaaaaagaattaatgctatttaaatttgattttgaaaaagcatatgattc |
62937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 25503550 - 25503646
Alignment:
| Q |
79 |
aatgaggttattgttgaggctcttaagttgaaaaaagaatttatgttgtttaaattggattttgaaaaagcatatcattctattgattagggtattt |
175 |
Q |
| |
|
||||||||| | | |||||||| ||| |||||||||| ||||||| |||||| | ||||||||||| || ||| | || ||||||| |||||||| |
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|
| T |
25503550 |
aatgaggttgtagatgaggctcgtaaaaagaaaaaagaacttatgttatttaaagttgattttgaaaaggcgtatgactcgattgattggggtattt |
25503646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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