View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_122 (Length: 219)
Name: NF13254_high_122
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_122 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 48815443 - 48815337
Alignment:
| Q |
20 |
atcctagatctataccagttagcttcagaccaaccgattaatctggacaattcagaaatttcatttagccgaaatgttactgaagagaaaattatgttat |
119 |
Q |
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| T |
48815443 |
atcctagatctataccagttagcttcagaccaaccgattaatctggacaattcagaaatttcctttagccgaaatgttactgaagagaaaattatgttat |
48815344 |
T |
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| Q |
120 |
aaggttg |
126 |
Q |
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| T |
48815343 |
aaggttg |
48815337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 20780342 - 20780401
Alignment:
| Q |
71 |
tcagaaatttcatttagccgaaatgttactgaagag---aaaattatgttataaggttgg |
127 |
Q |
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| T |
20780342 |
tcagaaatttcatttagccgaaacgttacagaagagagaaaaatcatgttctaaggttgg |
20780401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 48815312 - 48815284
Alignment:
| Q |
173 |
catgtcttttacagctgaaaattgttgtt |
201 |
Q |
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| T |
48815312 |
catgtcttttacagctgaaaattgttgtt |
48815284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 7371657 - 7371718
Alignment:
| Q |
49 |
ccaaccgattaatctggacaattcagaaatttcatttagccgaaatgttactgaagagaaaa |
110 |
Q |
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| T |
7371657 |
ccaactgattaatatggactagttagaaatttcctttagccgaaatgttattgaagagaaaa |
7371718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 28708021 - 28707953
Alignment:
| Q |
40 |
agcttcagaccaaccgattaatctggacaattcagaaatttcatttagccgaaatgttactgaagagaa |
108 |
Q |
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| T |
28708021 |
agcttcaggtcaactgattaatttggacaaatcagaaatttcctttagctgaaatgtacctgaagagaa |
28707953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 5142845 - 5142898
Alignment:
| Q |
56 |
attaatctggacaattcagaaatttcatttagccgaaatgttactgaagagaaa |
109 |
Q |
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| T |
5142845 |
attaatctggataagtcggaaatttcttttagccgaaatgttcttgaagagaaa |
5142898 |
T |
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