View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_123 (Length: 217)
Name: NF13254_high_123
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_123 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 50968812 - 50968613
Alignment:
| Q |
1 |
ttcatcgagtgtaatttccttgattaatcaacaactcatgactcaaagggcagtgggcatgtcaatttcattgtaagtatataggtttctctattgcttt |
100 |
Q |
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| T |
50968812 |
ttcatcgagtgtaatttccttgattaatcaacaactcatgactcaaagggcagtgggcatgtcaatttcattgtacgtatataggtttctctattgcttt |
50968713 |
T |
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| Q |
101 |
ggatatttatatttttggacaagctttgttaattcaactatatacaagcgatccaattgtagagcagggtgtgattgatgttttaattttgggatgaagg |
200 |
Q |
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| T |
50968712 |
ggatatttatatttttggacaagctttgttaattcaactatatacaagcgatccaattgtagagcagggtgtgattgatgttttaattttgggatgaagg |
50968613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50970924 - 50970885
Alignment:
| Q |
1 |
ttcatcgagtgtaatttccttgattaatcaacaactcatg |
40 |
Q |
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| T |
50970924 |
ttcatcgagtgtaatttccttgattaattaacaactcatg |
50970885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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