View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_125 (Length: 214)
Name: NF13254_high_125
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_125 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 3225105 - 3225308
Alignment:
| Q |
1 |
ttgttctttgtccagtatggtcaaaagaatccctaatcaaaccacctggtttagctttaatatcttgaatatgaagtccatgaataataacattattaac |
100 |
Q |
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| T |
3225105 |
ttgttctttgtccagtatggtcaaaagaatccctaatcaaaccacctggtttagctttaatattttgaatatgaagtccatgaatgataacattattaac |
3225204 |
T |
|
| Q |
101 |
aaattgcattgtaattccagcaccatccctaatttgaacattagctccacgaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatctg |
200 |
Q |
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| T |
3225205 |
aaattgcattgtaattccagcaccatccctaatttgaacattagctccacgaccatcaattgttttgtcagaagaaaccatcaattcttggttcaatcta |
3225304 |
T |
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| Q |
201 |
atga |
204 |
Q |
| |
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|||| |
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| T |
3225305 |
atga |
3225308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 2045283 - 2045174
Alignment:
| Q |
81 |
tgaataataacattattaacaaattgcattgtaattccagcaccatccctaatttgaacattagctccacgaccatcaattgttttgtcagaagaaacca |
180 |
Q |
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||||| || ||||| || || |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || || || ||||| || ||||||| |
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| T |
2045283 |
tgaatgatgacattgttgacgaattgcatggtaattccagcaccttccctaatttgcacattggctccacgaccgtcgatggtcttgtcggatgaaacca |
2045184 |
T |
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| Q |
181 |
tcaattcttg |
190 |
Q |
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| || ||||| |
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| T |
2045183 |
ttaactcttg |
2045174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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