View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_high_18 (Length: 545)
Name: NF13254_high_18
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 3915374 - 3915721
Alignment:
| Q |
20 |
acttggaacatcttctgaagctgtgagttatttgcttagttattatttcttggaatctttattgttt-cctatcactaattacgaattgtttgtactcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3915374 |
acttggaacatcttctgaagctgtgagttatttgcttagttattatttcttggaatctttattgttttcctatcactaattacgaattgtttgtactcat |
3915473 |
T |
|
| Q |
119 |
tttgttaggaatctgagcaagaacaatttaacaggacctattcccgcagagtttggtaatctcaaaagtatcatggaaatgtaagttatatatttttcta |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915474 |
tttgttaggaatctgagcagaaacaatttaacaggacctattcccgcagagtttggtaatctcaaaagtatcatggaaatgtaagttatatatttttcta |
3915573 |
T |
|
| Q |
219 |
atgaaaattttaagtattagtttatttgttttattcccttgattattctatttgcttctatgtggcagtgatctttcccataaccaactctctgagatga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915574 |
atgaaaattttaagtattagtttatttgttttattcccttgattattctatttgcttctatgtggcagtgatctttcccataaccaactctctgagatga |
3915673 |
T |
|
| Q |
319 |
ttcctgtagaacttggtcagcttcagagcatagcatcattgtaagctg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915674 |
ttcctgtagaacttggtcagcttcagagcatagcatcattgtaagctg |
3915721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 3915797 - 3915892
Alignment:
| Q |
442 |
atttacttggtttgaaataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcgcttgtaaattgtcttagtctctctctgct |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3915797 |
atttacttggtttgaaataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcacttgtaaattgtcttagtctctctctgct |
3915892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 34959488 - 34959409
Alignment:
| Q |
458 |
ataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacatcgcttgtaaattgtcttagtctctctctgct |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |
|
|
| T |
34959488 |
ataaaatgtaggagacttgaaaacaatgacttaactggggacgtgacgtcgcttgtaaactgtcgtagtctctctctgct |
34959409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University