View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_21 (Length: 524)
Name: NF13254_high_21
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 43663402 - 43663145
Alignment:
| Q |
16 |
atgctctagaattgccattttatggcttgcatgaatgactaagtaataaccagtcatttttaattgtaaagtttgatgagaggctgtatagaaatcctgt |
115 |
Q |
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| T |
43663402 |
atgctctagaattgccattttatggcttgcatgaatgactaagtaataaccagtcatttttaattgtaaagtttgatgagaggctgtatagaaatcctgt |
43663303 |
T |
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| Q |
116 |
tctagcaggactcagccctttctttatttatgtgatatttggtacattttggatgctcagaagataatgtagtgatgatgatgtataagcatgccttgat |
215 |
Q |
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| T |
43663302 |
tctagcaggactcagccctttctttatttatgtgatatttggtacattttggatgctcagaagataacgtagtgatgatgatgtataagcataccttgat |
43663203 |
T |
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| Q |
216 |
gcttggttaatccattaataatacttatgggatgatagttctgaattggactacatta |
273 |
Q |
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| T |
43663202 |
gcttggttaatccattaataatacttatggaatgatagttctgaattggactacatta |
43663145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 319 - 507
Target Start/End: Complemental strand, 43663098 - 43662910
Alignment:
| Q |
319 |
attgctactagggcaattgttatttgtaacaatctctcttatttccttccatcatagagaaataatggcttaactttatttgtcgttaaataataaataa |
418 |
Q |
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| T |
43663098 |
attgctactagggcaattgttatttgtaacaatctctcttatttccttccatcatagagaaataatggcttaactttatttgtcgttaaataataaataa |
43662999 |
T |
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| Q |
419 |
cctgtatactactattttatggctctgaagttgtgttgatcaactcaattatttttccagtgagggtgatataattggagtgttggtcc |
507 |
Q |
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| T |
43662998 |
cctgtatactactattttatggctctgaagttgtgttgatcaactcaattatttttccagtgagggtgatataattggagtgttggtcc |
43662910 |
T |
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