View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_26 (Length: 509)
Name: NF13254_high_26
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 47582642 - 47582164
Alignment:
| Q |
13 |
aatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgggaccatacaacaaaccaatgggtattatgcatggaactgaa |
112 |
Q |
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| T |
47582642 |
aatatgttcaaagaagatgatgataggtggtgccggaagaagatggtgtcccggcatgcgaccatacaacaaaccaatgggtattatgcatggaactgaa |
47582543 |
T |
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| Q |
113 |
gaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaaccttaaaaatagtaagaaaaattaa |
212 |
Q |
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| T |
47582542 |
gaaagctaaatgtgacaccaaatacctatttcttaggctctgcaagttaacaaacaccaaagaaagacacctcaaccttaaaaatagtaagaaaaattat |
47582443 |
T |
|
| Q |
213 |
cagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttgtttatatatgattnnnnnnnntagaaaaggaaaaggagttaaaaccaat |
312 |
Q |
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| T |
47582442 |
tagggtacgaaagacaaggttttacacttttatttaaatagaagtctcttctttatatatgattaaaaaaaa-atagaaggaaaaggagttaaaaccaat |
47582344 |
T |
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| Q |
313 |
tcactttataaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgcatggtacccttaaatgatatttggatt |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47582343 |
tcactttaaaaaacaaccttataatggtttacatgacaaacctatttttgaattttggatatccctaccctgcatggtacccttaaatgatatttggatt |
47582244 |
T |
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| Q |
413 |
catctctagccttgattgcagagtttcgttaaactccacatatacaataatgtaaaaataaattatttcctttttccaat |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47582243 |
catctctagccttgattgcagagtttcgttaaactccacatatacaataatgtaaaaagaaattatttcctttttccaat |
47582164 |
T |
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