View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_high_28 (Length: 502)

Name: NF13254_high_28
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13254_high_28
NF13254_high_28
[»] chr6 (4 HSPs)
chr6 (14-485)||(27876278-27876749)
chr6 (54-169)||(26978487-26978602)
chr6 (120-485)||(8481374-8481739)
chr6 (17-211)||(18148776-18148970)
[»] chr5 (2 HSPs)
chr5 (14-485)||(41720687-41721158)
chr5 (14-485)||(34354287-34354758)
[»] chr4 (4 HSPs)
chr4 (14-485)||(48699390-48699861)
chr4 (18-485)||(42268180-42268647)
chr4 (18-485)||(30947756-30948223)
chr4 (120-485)||(2001154-2001521)
[»] chr3 (3 HSPs)
chr3 (18-485)||(5820848-5821315)
chr3 (41-485)||(2814859-2815303)
chr3 (59-485)||(42587228-42587654)
[»] chr8 (2 HSPs)
chr8 (18-485)||(9441664-9442132)
chr8 (59-460)||(24596102-24596503)
[»] chr2 (1 HSPs)
chr2 (18-485)||(827756-828223)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Original strand, 27876278 - 27876749
Alignment:
Q  14 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27876278 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 27876377  T
Q  114 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27876378 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 27876477  T
Q  214 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27876478 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacag 27876577  T
Q  314 gacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27876578 gacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 27876677  T
Q  414 tacataacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27876678 tacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 27876749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 26978487 - 26978602
Alignment:
Q  54 ttcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttca 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26978487 ttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctctttagaagtgctgtcatttttctgcttactttgcagttca 26978586  T
Q  154 ttttctgcaaagacta 169  Q
    ||||||||||||||||    
T  26978587 ttttctgcaaagacta 26978602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 120 - 485
Target Start/End: Original strand, 8481374 - 8481739
Alignment:
Q  120 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgatac 219  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||   |||||||||||||| |||||||    
T  8481374 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatctctgccaacaacaagcttgcgaatagtgggatcccacaagcgatac 8481473  T
Q  220 cccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggacaac 319  Q
    ||||| |  ||||||| |||||||||||| ||||||||  | |||||||| ||   ||| ||| | ||||||||| ||||||||  || ||||  ||| |    
T  8481474 cccttcatcttgtcagtataacccaagaatatacattttttagactttggatctgtctttgttctgtcttgggagatgtacatcctgtgcacaatacatc 8481573  T
Q  320 caaaaacatgcagagaagaataatcta-ctggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacat 418  Q
    | || ||||| |  || |||||| |||  ||| |||   ||||| |||||||||||||| |||||| |||| || ||| |||| || ||||| || ||||    
T  8481574 cgaacacatgtaaggatgaataa-ctaggtggatttttgttccaaatctccatcggtgttttcaaaccaattgcagtttatggagatcgattgatcacat 8481672  T
Q  419 aacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    |||| ||  ||||||| ||||  ||| | || |||||||||||||| |||||| || ||||| ||||    
T  8481673 aacatgccattttcgcagcttttgccaaaaaagacttggccattcctgctgttctctgcataactct 8481739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 18148776 - 18148970
Alignment:
Q  17 cattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttt 116  Q
    |||||||  ||| |||||||||  | |||||| | |||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||| |||||||    
T  18148776 cattgaccgcatttggttcttgcacatcgtgctctgattcagcttcagaagaatcactttccttgaatttttcttccatatgcactattgcaatctcttt 18148875  T
Q  117 agaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccaca 211  Q
      ||||| |||| ||||| |||||||| | ||  ||||||||| |||||||||||||| || |||||||||||||||||| ||||| ||| ||||    
T  18148876 gaaagtgttgtcttttttatgctcactctacaactcattttctacaaagactacatccatgataacaacaaccttgcgggtagtggaatctcaca 18148970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Complemental strand, 41721158 - 41720687
Alignment:
Q  14 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41721158 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 41721059  T
Q  114 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41721058 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 41720959  T
Q  214 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41720958 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacag 41720859  T
Q  314 gacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41720858 gacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 41720759  T
Q  414 tacataacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41720758 tacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 41720687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Complemental strand, 34354758 - 34354287
Alignment:
Q  14 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 113  Q
    ||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34354758 catcattgacatcatatggttcttgttctccgtgcatcggttcagcttcagaagaatcactttctttggatttttcttccatctgcattatagcagtctc 34354659  T
Q  114 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34354658 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaataaccttgcgggcagtgggatcccacagg 34354559  T
Q  214 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacag 313  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  34354558 cgataccccttaacattgtcagcataacccaagaagatacattttctgaactttgggtccaacttcgttctgtcttgggagttgtacatcacgtacacag 34354459  T
Q  314 gacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 413  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||    
T  34354458 gacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaattgtcgttgatggtgagcgatttat 34354359  T
Q  414 tacataacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  34354358 tacataacaggcggttttcactgcttctgcccagaacgacttggccattcctgctgttttcagcatagctct 34354287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Original strand, 48699390 - 48699861
Alignment:
Q  14 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699390 catcattgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctc 48699489  T
Q  114 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699490 tttagaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacagg 48699589  T
Q  214 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48699590 cgataccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacag 48699689  T
Q  314 gacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48699690 gacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttat 48699789  T
Q  414 tacataacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48699790 tacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 48699861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 42268647 - 42268180
Alignment:
Q  18 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttta 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42268647 attgacatcatctggttcttgttcttcgtgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctcttta 42268548  T
Q  118 gaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268547 gaagtgctgtcatttttctgcttactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 42268448  T
Q  218 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  42268447 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggaca 42268348  T
Q  318 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42268347 accaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 42268248  T
Q  418 taacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42268247 taacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 42268180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 30947756 - 30948223
Alignment:
Q  18 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  30947756 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttctatctgcagaatagcagtctcttta 30947855  T
Q  118 gaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947856 aaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 30947955  T
Q  218 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30947956 accccttaacattgtcagcataacccaagaagatacatttcctagactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggaca 30948055  T
Q  318 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  30948056 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgtcgttgatggtgagcgatttattaca 30948155  T
Q  418 taacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  30948156 taacaggcggttttcactgcttctgcccagaacgacttggccatttccgctgttttcagcatagctct 30948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 120 - 485
Target Start/End: Complemental strand, 2001521 - 2001154
Alignment:
Q  120 agtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacat--ccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 217  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||| |||| | |||||||||||||||| |||||    
T  2001521 agtgttgtcatgtttctgctcactttgcagttcattttctgcaaagactacatatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgat 2001422  T
Q  218 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggaca 317  Q
    ||||||| || |||||||||||||||||||| ||||| || || |||||||| || |  || ||| ||||||||||||||| |||  ||||||||  |||    
T  2001421 accccttcacgttgtcagcataacccaagaatatacaatttctagactttggatctagttttgttctttcttgggagttgttcattgcgtacacaataca 2001322  T
Q  318 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 417  Q
     || || ||||  |  |||||||||||   ||||||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| || ||     
T  2001321 tccgaacacatataaggaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatggagatcgattgatcacg 2001222  T
Q  418 taacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||| |||| |||||| | ||||| |||||||| ||||| |||| ||| | |||| ||| ||| |||||    
T  2001221 taataggcagttttcacagcttctgcccagaaagacttagccactcctgttgttctcaacatggctct 2001154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 5820848 - 5821315
Alignment:
Q  18 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttta 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5820848 attgacatcatctggttcttgttcttcgtgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctcttta 5820947  T
Q  118 gaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5820948 gaagtgctgtcatttttctgcttactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 5821047  T
Q  218 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  5821048 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggaca 5821147  T
Q  318 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5821148 accaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 5821247  T
Q  418 taacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5821248 taacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 5821315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 41 - 485
Target Start/End: Original strand, 2814859 - 2815303
Alignment:
Q  41 cttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctc 140  Q
    |||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2814859 cttcgtgcactgattctgattctgaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaaatgctgtcatttttctgctc 2814958  T
Q  141 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataa 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2814959 actttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggaccccacaggcgataccccttaacattgtcagcataa 2815058  T
Q  241 cccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaat 340  Q
    |||||||||||||||||| | ||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  2815059 cccaagaagatacatttcttagactttgggtccaactttgttctttcttgagagttgtacatcacatacacaggacaaccaaacacatgtagagaagaat 2815158  T
Q  341 aatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcgctgcttc 440  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  2815159 aatctactggctttcctttccacatctccataggagtcttcaaatcaatcaacgttgatggtgagcgatttattacataacaggcggttttcactgcttc 2815258  T
Q  441 agcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  2815259 tgcccagaacgacttggccattcccgctgttttcagcatagctct 2815303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 59 - 485
Target Start/End: Complemental strand, 42587654 - 42587228
Alignment:
Q  59 cttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttcattttc 158  Q
    ||||||||||||||  |||||| || ||   ||| |||| ||||  || ||| ||||| | |||| |||||| |||||||||||||||||||||||||||    
T  42587654 cttcagaagaatcatcttctttagacttcatttctatctccactgcagtagtttctttggcagtgttgtcatgtttctgctcactttgcagttcattttc 42587555  T
Q  159 tgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaagaagatacatttc 258  Q
    ||||||||||||||| ||||||||||||| |||| | |||||||||||||||| ||||||||| || || |||||||||||||||||||| ||||||||     
T  42587554 tgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccacaagcgataccctttcacgttgtcagcataacccaagaatatacatttt 42587455  T
Q  259 ctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctt 358  Q
    || |||||||| || | ||| ||| |||||||||||||||||||  ||||||||| ||| || || ||||| |  |||||||||||   ||||||||| |    
T  42587454 ctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgt 42587355  T
Q  359 tccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcgctgcttcagcccagaacgacttggc 458  Q
    |||| |||||||| ||||| | |||| |||| || |||||||| || ||||| || || ||||||||||||||| | ||||| |||||||| ||||| ||    
T  42587354 tccaaatctccattggtgtttacaaaccaattgcggttgatggagatcgattgatcacgtaacaggcggttttcacagcttctgcccagaaagacttagc 42587255  T
Q  459 cattcccgctgttttcagcatagctct 485  Q
    || | | |||||| ||| ||| |||||    
T  42587254 cactactgctgttctcaacatggctct 42587228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 9441664 - 9442132
Alignment:
Q  18 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttta 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9441664 attgacatcatctggttcttgttcttcgtgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctcttta 9441763  T
Q  118 gaagtgctgtcatttttctgctcactttgcagttcattttct-gcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcga 216  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441764 gaagtgctgtcatttttctgcttactttgcagttcattttcttgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcga 9441863  T
Q  217 taccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9441864 taccccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacatacacaggac 9441963  T
Q  317 aaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattac 416  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9441964 aaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcaccgttgatggtgagcgatttattac 9442063  T
Q  417 ataacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9442064 ataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctct 9442132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 59 - 460
Target Start/End: Original strand, 24596102 - 24596503
Alignment:
Q  59 cttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctctttagaagtgctgtcatttttctgctcactttgcagttcattttc 158  Q
    |||||||||||| |  |||||| |||||   ||| |||| ||||  || ||| ||||| | |||| |||||| |||||||||||||||||||||||||||    
T  24596102 cttcagaagaattatcttctttagatttcatttctatctccactgcagtagtttctttggcagtgttgtcatgtttctgctcactttgcagttcattttc 24596201  T
Q  159 tgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgataccccttaacattgtcagcataacccaagaagatacatttc 258  Q
    ||||||||||||||| ||||||||||||| |||| | |||||||||||||| | ||||||||| || || |||||||||||||||||||| ||||||||     
T  24596202 tgcaaagactacatctctgctaacaacaagcttgtgagcagtgggatcccataagcgataccctttcacgttgtcagcataacccaagaatatacatttt 24596301  T
Q  259 ctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctt 358  Q
    || |||||||| || | ||| ||| |||||||||||||||||||  ||||||||| ||| || || ||||| |  |||||||||||   ||||||||| |    
T  24596302 ctagactttggatctagctttgttctttcttgggagttgtacattgcgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgt 24596401  T
Q  359 tccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcgctgcttcagcccagaacgacttggc 458  Q
    |||| |||||||| ||||| |||||| |||| || |||||||  || ||||| || || ||| ||||||||||| | ||||| |||||||| ||||| ||    
T  24596402 tccaaatctccattggtgttttcaaaccaattgcggttgatgtagatcgattgatcacgtaataggcggttttcacagcttctgcccagaaagacttagc 24596501  T
Q  459 ca 460  Q
    ||    
T  24596502 ca 24596503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 828223 - 827756
Alignment:
Q  18 attgacatcatctggttcttgttcttcgtgcaccgattcagcttcagaagaatcactttctttggatttttcttccatctgcactatagcagtctcttta 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  828223 attgacatcatctggttcttgttcttcgtgcaccggttcagcttcagaagaatcactttctttggatttttcttccatctgcacaatagcagtctcttta 828124  T
Q  118 gaagtgctgtcatttttctgctcactttgcagttcattttctgcaaagactacatccctgctaacaacaaccttgcgggcagtgggatcccacaggcgat 217  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  828123 gaagtgctgtcatttttctgcttactttgcagttcattttctgcaaagactagatccctgctaacaacaaccttgcgggtagtgggatcccacaggcgat 828024  T
Q  218 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttttttcttgggagttgtacatcacgtacacaggaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  828023 accccttaacattgtcagcataacccaagaagatacatttcctggactttgggtccaacttcgttctttcttgggagttgtacatcacgtacacaggaca 827924  T
Q  318 accaaaaacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 417  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  827923 accaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattaca 827824  T
Q  418 taacaggcggttttcgctgcttcagcccagaacgacttggccattcccgctgttttcagcatagctct 485  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||||    
T  827823 taacaggcggttttcactgcttctgcacagaacgacttggccattcccgctgttttcagcataactct 827756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University