View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_29 (Length: 496)
Name: NF13254_high_29
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 44 - 451
Target Start/End: Original strand, 8240014 - 8240428
Alignment:
| Q |
44 |
ccttctagttttaaaatggagaataacctcccttaagttttcatcaatagataaatgttttccttctctcttaactcagatatttttctgttaagataga |
143 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8240014 |
ccttctagttttaaaatggagaataacctcccttaaattttcatcaatagataaatgttttccttctctcttaactcagatatttttctgttaagataga |
8240113 |
T |
|
| Q |
144 |
aacaagtaaagttgaaatctcaaaaaactagtgaattttcactcatcaaagttgaaatccattttcttttatttccttttcatgttcaacaaattcctta |
243 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8240114 |
aacaagtgaagttgaaatctcaaaaaactagtgaattttcactcatcaaagttgaaatccattttcttttatttccttttcatgttcaacaaattcctta |
8240213 |
T |
|
| Q |
244 |
at-------caaaaggtgaaattagaatatgatgaggttaattggnnnnnnnccctccaaatctctgagctttttgaatccggtggtaaacactccctaa |
336 |
Q |
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| T |
8240214 |
attaaaaactaaaaggtgaaattagaatatgatgaggttaattggtttttttccctccaaatctctgagctttttgaatccggtggtaaacactccctaa |
8240313 |
T |
|
| Q |
337 |
gcatatcatggagaggatttggagaaggttggtatttatttgtaacctcaatattttatttgtaatgttttttgttggataggacaagcaaacctattta |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8240314 |
gcatatcatggagaggatttggagaaggttggtatttatttgtaacctcaatattttatttgtattgttttttgttggataggacaagcaaacctattta |
8240413 |
T |
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| Q |
437 |
tattattgactatta |
451 |
Q |
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| T |
8240414 |
tactgttgactatta |
8240428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42327741 - 42327655
Alignment:
| Q |
1 |
tacattcacctcccttgagttcttttcaaatgatgcaaataccccttctagttttaaaatggagaataacctcccttaagttttcat |
87 |
Q |
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| T |
42327741 |
tacactcacctcccttgagttttctttaaatgatagggacaccccctctagttttaaaatagacactaacatcccttaagttttcat |
42327655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 54628468 - 54628514
Alignment:
| Q |
41 |
accccttctagttttaaaatggagaataacctcccttaagttttcat |
87 |
Q |
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| T |
54628468 |
accccctctagttttaaaatcgacactaacctcccttaagttttcat |
54628514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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