View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_high_3 (Length: 759)
Name: NF13254_high_3
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 13 - 741
Target Start/End: Original strand, 8452677 - 8453395
Alignment:
| Q |
13 |
cataggcaaggatgaagagggggatattaattaaattatcannnnnnnaaaa-tgtaaactaaggaacaataggaaatacagcataatgatcatcaaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8452677 |
cataggcaaggatgaagagggggatattaa----attatcagggggggaaaaatgtaaactaaggaacaataggaaatacaacataatgatcatcaaatt |
8452772 |
T |
|
| Q |
112 |
aaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccggcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8452773 |
aaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccggcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggat |
8452872 |
T |
|
| Q |
212 |
ggatggatattggatactgaggagcatgataagagaaaaggcaacagttggtaaagtctgataaatccataatatttaagacattacaagaagaatgaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8452873 |
ggatggatattggatactgaggagcatgataagagaaaaggcaacagttggtaaagtctgataaatccata---tttaagacattacaagaagaatgaag |
8452969 |
T |
|
| Q |
312 |
agcagataatattactttatagaggaaaaggatgtgtgaattttcacataatcatgcctcatgttgcttggaatatcagtactggtttctttttgtaagt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8452970 |
agcagataatattactttatagaggaaaaggatgtgtcaattttcacataatcatgcctcatgttgcttggaatatcagtaatggtttctttttgtaagt |
8453069 |
T |
|
| Q |
412 |
tggaatgaagggatttgctcaaatgtacaccagaagtagaacgaacctgcatgaaagaaagatattgatgccatgatcatttggataattggtagtcggc |
511 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453070 |
tggaatgaaaggatttgctcgaatgtacaccagaagtagaacgaacctgcatgaaa----gatattgatgccatgatcatttggataattggtagtcggc |
8453165 |
T |
|
| Q |
512 |
accataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaa |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453166 |
accataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaa |
8453265 |
T |
|
| Q |
612 |
catctttggccttctcaacattcatttccagtgcatacctagttggaaggctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctc |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453266 |
catctttggccttctcaacattcatttccagtgcatacctagttggaaggctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctc |
8453365 |
T |
|
| Q |
712 |
tgagacattcaattccttgagtctaccaag |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8453366 |
tgagacattcaattccttgagtctaccaag |
8453395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 652
Target Start/End: Original strand, 53664042 - 53664103
Alignment:
| Q |
591 |
gtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcataccta |
652 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||| |||||||| |||| |||||||||| |
|
|
| T |
53664042 |
gtaaccttttatgcataaggacatattgagccctctccacattcatatccaatgcataccta |
53664103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University