View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_32 (Length: 470)
Name: NF13254_high_32
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 8183642 - 8183198
Alignment:
| Q |
10 |
aatgaatagaagtagtgtttcaatagataaataggtatggtaacaacagccaggacgacaaatataacagctacatgatcaacttcatgcttgatcttgg |
109 |
Q |
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| T |
8183642 |
aatgaatagaagtagtgtttcaatagataaataggtatggtaacaacagccaggacgacaaatataacagctacatgatcaacttcatgcttgatcttgg |
8183543 |
T |
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| Q |
110 |
gactttgagcagagtaaaatgtagccaaaatgtgtgcgattccaatggcaaagagaggagcttccatgccagccaaaactgcacctactgacccaagaat |
209 |
Q |
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| T |
8183542 |
gactttgagcagagtaaaatgtagccaaaatgtgtgtgattccaatggcaaagagaggagcttccatgccagccaaaactgcacctactgacccaagaat |
8183443 |
T |
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| Q |
210 |
tgcatagggccattctggagcgttcagtttcagtagacccaaaattgatggaacggaagcagtgtttgatgtcaatccttgatcacttgattgcacctcc |
309 |
Q |
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| T |
8183442 |
tgcatagggccattctggagcgttcagtttcagtagacccaaaattgatggaacggaagcagtgtttgatgtcaatccttgatcacttgattgcacctcc |
8183343 |
T |
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| Q |
310 |
tcattgttcaggttgtttggaatttctcgaaaactataatttctcgaacttcccaagcgaaataatgagctagagcttgtgaagttttgtggtgcctgca |
409 |
Q |
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| T |
8183342 |
tcattgttcaggttgtttggaatttctcgaaaactataatttctcgaacttcccaagcgaaataatgagctagagcttgtgaagttttgtggtgcctgca |
8183243 |
T |
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| Q |
410 |
aactcacatactcaccatttctggacatcaattctaaatgagtcc |
454 |
Q |
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| T |
8183242 |
aactcacatactcaccatttctggacatcaattctaaatgagtcc |
8183198 |
T |
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