View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_34 (Length: 464)
Name: NF13254_high_34
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 273 - 454
Target Start/End: Original strand, 11098940 - 11099121
Alignment:
| Q |
273 |
actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
372 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11098940 |
actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
11099039 |
T |
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| Q |
373 |
acacagaattgatgttcatttgttttttgaagtgaagaaacgtaatattctactggagtgtttacaacatacttgccctatg |
454 |
Q |
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| T |
11099040 |
acacaaaattgatgctcatttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg |
11099121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 11098758 - 11098915
Alignment:
| Q |
87 |
gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaattggaagaatat |
186 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11098758 |
gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat |
11098857 |
T |
|
| Q |
187 |
agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
11098858 |
agaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaa |
11098915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 273 - 454
Target Start/End: Complemental strand, 17998389 - 17998208
Alignment:
| Q |
273 |
actccttcaagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
372 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17998389 |
actccttcaagaatgaaaaagagttgagtcagaagtttctcatagtacagaaaactagcatatgaaactaattgtttgttctatatttaaagatatttaa |
17998290 |
T |
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| Q |
373 |
acacagaattgatgttcatttgttttttgaagtgaagaaacgtaatattctactggagtgtttacaacatacttgccctatg |
454 |
Q |
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||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17998289 |
acacaaaattgatgctcatttgtttcttgaagtgaagaaacgtaatattctcctggagtgtttacaacatacttgccctatg |
17998208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 17998571 - 17998414
Alignment:
| Q |
87 |
gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaattggaagaatat |
186 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17998571 |
gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagctaattggaagaatat |
17998472 |
T |
|
| Q |
187 |
agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaatactaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
17998471 |
agaaaatagtaataacaaaatctgtaagtcattcatggtcaatggaattcaatactaa |
17998414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 240
Target Start/End: Complemental strand, 36283563 - 36283417
Alignment:
| Q |
87 |
gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaattggaagaatat |
186 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
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| T |
36283563 |
gagacaatatatttccacttgttggataagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataactgtagttaattggaagagtat |
36283464 |
T |
|
| Q |
187 |
agaaaatagtaataacaaaatctgtaagtcattcatggccactggaattcaata |
240 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36283463 |
agaaaatagt-------aaatctgtaagtcattcatggccactggaattcaata |
36283417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 19913217 - 19913083
Alignment:
| Q |
98 |
tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaattggaagaatatagaaaatagta |
197 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
19913217 |
tttccacttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaactgacataa-cgtagttaattggaagaatatagaaaatagt- |
19913120 |
T |
|
| Q |
198 |
ataacaaaatctgtaagtcattcatggccactggaattcaata |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19913119 |
------aaatctgtaagtcattcatggccactggaattcaata |
19913083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 40571711 - 40571576
Alignment:
| Q |
98 |
tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatttaagaactgacataaccgtagctaattggaagaatatagaaaatagta |
197 |
Q |
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|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| | |
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| T |
40571711 |
tttccgcttgttgggtaagtaatgctaggcaagaattaagaaattgtatatttaagaaccgacataactgtagttaattggaagaatatagaaaataat- |
40571613 |
T |
|
| Q |
198 |
ataacaaaatctgtaagtcattcatggccactggaattcaata |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40571612 |
------aaatctgtaagtcattcatggccactggaattcaata |
40571576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 386
Target Start/End: Complemental strand, 6560591 - 6560484
Alignment:
| Q |
281 |
aagaatgaaaaagagttgaatcagaagtttctcatagtacagaaaactagca-tatgaaactaattgtttgttctatat--ttaaagatatttaaacaca |
377 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| ||||||||| || |||||||||||||||| |||||| ||||||| ||||||| | |
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| T |
6560591 |
aagaatgaaaaagacttgaatgt-aagtttctcatagtacaacaaactagcattacgaaactaattgtttgtactatatacaaaaagataattaaacaga |
6560493 |
T |
|
| Q |
378 |
gaattgatg |
386 |
Q |
| |
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||||||||| |
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|
| T |
6560492 |
gaattgatg |
6560484 |
T |
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