View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_35 (Length: 458)
Name: NF13254_high_35
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 381045 - 381238
Alignment:
| Q |
13 |
aatatagattaaatagccagattagtctctaactgtgtgggacactctcaaatagatccccaactttatgaatattacaaaaaggtccttgactctatca |
112 |
Q |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
381045 |
aatatagattaaacagccaaattagtctctaactgtgtaggacactctcaaatagatccctgactttatgaatat-acaaaaaggtccttgactctatca |
381143 |
T |
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| Q |
113 |
aattttattcatattagtccttcaaagaatacaataatccaacaatatgaaatacacaagatttataatactattgaaactgaaattttaaacac |
207 |
Q |
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| T |
381144 |
aattttattcatattagtccttcaaagaatacaataatccaacaatatgaaatacacaaggtttataagactatagaaactgaaattttaaacac |
381238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 285 - 439
Target Start/End: Original strand, 381316 - 381470
Alignment:
| Q |
285 |
tgaattttattttacacaaacaagattgaattaccatatgcatgtaaatttaaacccaatccaataatgaaattacctgcagcaaccacggattcaagat |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
381316 |
tgaattttattttacacaaacaagattgaattaccatatgcatgtaaatttaaacccaatccaataatgaaattacctgcagcaaccacggattcaagat |
381415 |
T |
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| Q |
385 |
ctttcattttgacacgttttctaaggggttcatgcttatctcccaagtgggtatt |
439 |
Q |
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| T |
381416 |
ctttcattttgacacgttttctaaggggttcatgcttatctcccaagtggctatt |
381470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 44677195 - 44677267
Alignment:
| Q |
62 |
aaatagatccccaactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtcctt |
134 |
Q |
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| T |
44677195 |
aaatagattcccaactttatgaatatttcaaaaaggtcattgactcttttaaattttattgatattaatcctt |
44677267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 49393515 - 49393598
Alignment:
| Q |
60 |
tcaaatagatccccaactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaagaata |
143 |
Q |
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|||||||||||| ||||||| | |||| | |||| | |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
49393515 |
tcaaatagatccatcactttatcagtatttcgaaaatgaccttcactctatcaaattttattcatattagtccttcaaaaaata |
49393598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 4949174 - 4949128
Alignment:
| Q |
78 |
ttatgaatattacaaaaaggtccttgactctatcaaattttattcat |
124 |
Q |
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||||||| ||| ||||||| || |||||||||||||||||||||||| |
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| T |
4949174 |
ttatgaacatttcaaaaagatcattgactctatcaaattttattcat |
4949128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 28117559 - 28117637
Alignment:
| Q |
64 |
atagatccccaactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaagaata |
143 |
Q |
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|
||||||||| ||||||||||||||| ||||||||| ||| | |||||||||||| |||||||||| |||||||||||| |
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| T |
28117559 |
atagatccctaactttatgaatatttcaaaaaggtttctgattttatcaaattttactcatattagt-cttcaaagaata |
28117637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 19397920 - 19397854
Alignment:
| Q |
77 |
tttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaagaata |
143 |
Q |
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|||| ||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
19397920 |
tttacgaatatttcaaaaaggtatttgactctatcaacttttactcatattagtccttcaaaaaata |
19397854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 35537130 - 35537187
Alignment:
| Q |
78 |
ttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttc |
135 |
Q |
| |
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|||| |||||| |||||||||||| ||||||| ||||||||| |||||||||| |||| |
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| T |
35537130 |
ttattaatatttcaaaaaggtcctggactctaccaaattttactcatattagttcttc |
35537187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 1906204 - 1906119
Alignment:
| Q |
57 |
ctctcaaatagatccccaactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaagaata |
143 |
Q |
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|||||||||| |||| |||||||||||||| |||||| ||| ||||||| ||||| |||| ||| ||||||||||||||||||| |
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| T |
1906204 |
ctctcaaatacgtccctgactttatgaatatttcaaaaaagtctctgactctgtcaaa-tttactcacattagtccttcaaagaata |
1906119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 987361 - 987418
Alignment:
| Q |
78 |
ttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttc |
135 |
Q |
| |
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||||||||||| ||||||||||| ||||| | |||||||| | ||||||||||||||| |
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| T |
987361 |
ttatgaatatttcaaaaaggtccctgactttgtcaaatttcactcatattagtccttc |
987418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 489614 - 489678
Alignment:
| Q |
75 |
actttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaaga |
140 |
Q |
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|||||||||||||| ||||| ||| ||||| ||| | |||||||| ||| |||||||||||||||| |
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| T |
489614 |
actttatgaatatttcaaaa-ggttcttgaatcttttaaattttagtcacattagtccttcaaaga |
489678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 48861116 - 48861195
Alignment:
| Q |
54 |
acactctcaaatagatccccaactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtcctt |
134 |
Q |
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|||||||||||||| || |||||||||| |||||| |||| | | | |||||||||||||||||||| |||||| ||||| |
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| T |
48861116 |
acactctcaaataggtcaccaactttataaatatttgaaaa-gattcatgactctatcaaattttatttatattaatcctt |
48861195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 200146 - 200212
Alignment:
| Q |
74 |
aactttatgaatattacaaaaaggtccttgactctatcaaattttattcatattagtccttcaaaga |
140 |
Q |
| |
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||||||||||||||| |||||| | | || ||||||| |||||| | |||||||||| ||||||||| |
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| T |
200146 |
aactttatgaatattccaaaaatgactttaactctattaaatttgactcatattagtacttcaaaga |
200212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 34296251 - 34296154
Alignment:
| Q |
37 |
gtctctaactgtgtgggacactctcaaatagatccccaactttatgaatattacaaaaaggtccttga----ctctatcaaattttattcatattagt |
130 |
Q |
| |
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|||||| ||| ||| |||||||| ||||||| || | ||| | ||||||||| ||||||| ||||||| || ||||||| ||||||||||||||| |
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| T |
34296251 |
gtctctgactttgtaggacactcccaaataggtctctaacatcatgaatatttcaaaaagatccttgatttgctttatcaaagtttattcatattagt |
34296154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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