View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_36 (Length: 443)
Name: NF13254_high_36
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 55067552 - 55067741
Alignment:
| Q |
14 |
gagatgaataaagaaataagatgcaatttttgttatggtattctctattttccatttcaatatgtctgtttcttataaatttataaacaaacaatctttt |
113 |
Q |
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| T |
55067552 |
gagatgaataaagaaataagatgcaatttttgttgtggtattctctattttccatttctatatgtctgtttcttataaatttataaacaaacaatctttt |
55067651 |
T |
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| Q |
114 |
tctttgttgaattttttaacctgtatgattatgttagaaacagagtgcaagggatactccaacctaattttagcgtataaataacataaa |
203 |
Q |
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| T |
55067652 |
tctttgttcaattttttaacctgtatgattatgttagaaacagagtgcaagggatactccaacctaattttagcgtataaataacataaa |
55067741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 237 - 426
Target Start/End: Original strand, 55067752 - 55067939
Alignment:
| Q |
237 |
aatcctaaaatcacacaaacaagaaaaaattaaccaagatccgaaagtctcaaacacatgtgagggtgagtacaccctttgattttaccaatcccaaaac |
336 |
Q |
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| T |
55067752 |
aatcctaaaatcacacaaacaagaaaaaattaaccaagatccgaaagtctcaaacacatgtgagggtgagtacaccctttgatt--accaatcccaaaac |
55067849 |
T |
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| Q |
337 |
aaaagctttagaaaaatcacattattcctccttttccaaatagcccaaatagttgctaaccaaataatagcgtacaatctttttccagat |
426 |
Q |
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| T |
55067850 |
aaaagctttagaaaaatcacattattccaccttttccaaatagcccaaatagttgctaaccaaataatagtgtacaatctttttccagat |
55067939 |
T |
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