View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_38 (Length: 440)
Name: NF13254_high_38
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 36205818 - 36205410
Alignment:
| Q |
1 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205818 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaag |
36205719 |
T |
|
| Q |
101 |
atgacgacgagcaagctggttatgactccaacaatgataatatattcacaaatcttaaaattcttgggcttttttatatgccaaaactagtgagcatcca |
200 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36205718 |
atgacga---gcaagctg------------------ataatatattcacaaatcttaaaattcttggccttttttatatgccaaaactagtgagcatcca |
36205640 |
T |
|
| Q |
201 |
caagagagctttggattttccttccttaaaacgttttgaggtagctaaatgcccaaatctgaggaagcttcctttgaattccagctttgctttaaagaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205639 |
caagagagctttggattttccttccttaaaacgttttgaggtagctaaatgccccaatctgaggaagcttcctttgaattccagctttgctttaaagaat |
36205540 |
T |
|
| Q |
301 |
aacttgattgcaatcaaaggagagacggagtggtgggacaaattagagtgggatgacacaattattccaaccttactacgtcctaaacttcaatggtgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205539 |
aacttgattgcaatcaaaggagagacggagtggtgggacaaattagagtgggatgacacaattattccaaccttactacgtcctaaacttcaatggtgac |
36205440 |
T |
|
| Q |
401 |
tgaatctcgtaaatcttatgggtacctttg |
430 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
36205439 |
tgaatctcgtaaatcttatgtgtacctttg |
36205410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 36231127 - 36230741
Alignment:
| Q |
1 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaag |
100 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||||| |||||||| |||||||||| ||||| |
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|
| T |
36231127 |
tcaataaatcatttgacatggttgatgtatgctccgcttcttgagatccttgttgttggtctttgtgattcaattgaagaggtggtgaaagaaggtaaag |
36231028 |
T |
|
| Q |
101 |
atgacgacgagcaagctggttatgactccaacaatgataatatattcacaaatcttaaaattcttgggcttttttatatgccaaaactagtgagcatcca |
200 |
Q |
| |
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|| |||| |||||||| | ||||||||| ||||||| ||||| ||||||||| | |||| | |||| | |||||||||||||||||||||||| |
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| T |
36231027 |
ataacgaa---caagctggatctgactccaaaaatgatatgatatttgcaaatcttacagatctttgcctttatggtatgccaaaactagtgagcatcca |
36230931 |
T |
|
| Q |
201 |
caagagagctttggattttccttccttaaaacgttttgaggtagctaaatgcccaaatctgaggaagcttcctttgaattccagctttgctttaaagaat |
300 |
Q |
| |
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||||||||||||||||||||||||| |||||||| || ||||| || | ||||| |||||||||||||||||||| |||||||| |||||||| |||| | |
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| T |
36230930 |
caagagagctttggattttccttccctaaaacgtattaaggtaactgattgccccaatctgaggaagcttcctttcaattccaggtttgctttcaagatt |
36230831 |
T |
|
| Q |
301 |
aacttgattgcaatcaaaggagagacggagtggtgggacaaattagagtgggatgacacaattattccaaccttactacgtcctaaactt |
390 |
Q |
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||||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36230830 |
aacttgattgcaatccaaggtgagacagagtggtgggacaatttagagtgggatgacacaattattccaaccttgctacgtcctaaactt |
36230741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 9765628 - 9765246
Alignment:
| Q |
1 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||| |||||| ||||| || |||||||||| ||||| |
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| T |
9765628 |
tcaataactcatttgacatggttgaggtatgctccgcttcttgagaagcttgttgtttcttcttgtagttcaattgaagaagtggtgaaagaagttaaag |
9765529 |
T |
|
| Q |
101 |
atgacgacgagcaagctggttatgactccaacaatgataatatattcacaaatcttaaaattcttgggcttttttatatgccaaaactagtgagcatcca |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||| ||||| | |||| | ||||| | || |||||||||||||| |
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|
| T |
9765528 |
atgacga---gcaagctgactatgactccaacaatgatattatattcagaaatcttaaagttcttcgcctttctaatatgtctaagctagtgagcatcca |
9765432 |
T |
|
| Q |
201 |
caagagagctttggattttccttccttaaaacgttttgaggtagctaaatgcccaaatctgaggaagcttcctttgaattccagctttgctttaaagaat |
300 |
Q |
| |
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||||||||||||||||||||||||| |||||||| || |||| | | ||||| ||||| | |||||||||||| |||||||||||| ||| ||||| |
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| T |
9765431 |
caagagagctttggattttccttccctaaaacgtattagggtatttgagtgccccaatctaaagaagcttcctttcaattccagctttacttccaagaac |
9765332 |
T |
|
| Q |
301 |
aacttgattgcaatcaaaggagagacggagtggtgggacaaattagagtgggatgacacaattattccaaccttactacgtcctaa |
386 |
Q |
| |
|
||||||| || |||| ||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
9765331 |
aacttgactgtaatccaaggatcaacgaagtggtgggacaatttagagtgggatgacacaatcattccaagcttactacgtcctaa |
9765246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 25475219 - 25475604
Alignment:
| Q |
1 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtccttgttgtgtctgtttgtgattcaatcgaagaggttgtgaaagaagctaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||| |||||||| |||||||||||||||| |
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| T |
25475219 |
tcaataactcatttgacatggttgaggtatgctccgcttctcgaggtcctttctgtttctgattgttattcaattgaagaggtggtgaaagaagctaaag |
25475318 |
T |
|
| Q |
101 |
atgacgacgagcaagctggttatgactccaacaatgataatatattcacaaatcttaaaattcttgggcttttttatatgccaaaactagtgagcatcca |
200 |
Q |
| |
|
|| | || |||||||| ||||||||||||||||| | ||||||| |||||||||| |||| | ||| | |||||| ||| |||||||||||||| |
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| T |
25475319 |
at---ggtgaacaagctggctatgactccaacaatgacatgatattcaaaaatcttaaagatctttgccttcataatatgcgaaatctagtgagcatcca |
25475415 |
T |
|
| Q |
201 |
caagagagctttggattttccttccttaaaacgttttgaggt---agctaaatgcccaaatctgaggaagcttcctttgaattccagctttgctttaaag |
297 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| || ||| || | | ||||| ||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
25475416 |
caagagagctttgaattttccttccctaaaacgtattatggttaaaggtcactgccccaatctgaggaagcttcctttgaattccggctttgcttccaag |
25475515 |
T |
|
| Q |
298 |
aataacttgattgcaatcaaaggagagacggagtggtgggacaaattagagtgggatgacacaattattccaaccttactacgtcctaa |
386 |
Q |
| |
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||||| || | || |||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25475516 |
aataatctggtcttgattcaaggagggaccaagtggtgggacaatttagagtgggatgacaatattattccaaccttactacgtcctaa |
25475604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 29133892 - 29133796
Alignment:
| Q |
112 |
caagctggttatgactccaacaatgataatatattcacaaatcttaaaattcttgggcttttttatatgccaaaactagtgagcatccacaagagag |
208 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
29133892 |
caagctggctatcactccgacaatgataatatattcacaaatcttaaggttcttcggctttttggtatgcaaaaactagtgagcatccacaagagag |
29133796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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