View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_high_4 (Length: 749)
Name: NF13254_high_4
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Complemental strand, 37163782 - 37163056
Alignment:
| Q |
18 |
acagattacaaaaaagaatgcgaggagaatgtaatagcaaatgccggaaacacaacggattcaagagagctcattaaagttgctttcaatgtcaccgtta |
117 |
Q |
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| T |
37163782 |
acagattacaaaaaagaatgcgaggagaatgtaatagcaaatgccggaaacacaacggattcaagagagctcattaaaattgctttcaatgtcaccgtta |
37163683 |
T |
|
| Q |
118 |
caaaaatcagcgatggaatcaagaaaaccaatcttttgcatgaggttgagaaggaaccaagggcaaaaatggcactagacacatgcaagcaattaatgga |
217 |
Q |
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| T |
37163682 |
caaaaatcagcgatggaatcaagaaaaccaatcttttgcatgaggttgagaaggaaccaagggcaaaaatggcactagacacatgcaagcaattaatgga |
37163583 |
T |
|
| Q |
218 |
tctttctattggcgaatttgataggtcaatagagggaatnnnnnnntttgatctcaataatt-agaaaacattcttgtgaatttaaaggtttggttaagt |
316 |
Q |
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| T |
37163582 |
tctttctattggcgaattcgataggtcaatagagggaataaaaaattttgatctcaataatttagaaaacattcttgtgaatttaaaggtttggttaagt |
37163483 |
T |
|
| Q |
317 |
ggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatgaagaatattttaacaacttcaatgcata |
416 |
Q |
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| T |
37163482 |
ggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatgaagaatattttaacaacttcaatgcata |
37163383 |
T |
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| Q |
417 |
tgagtagcaatgcacttgctgtcatttcagatttggcagataatgttttggatttgaacgcgacaacagatggacgtcgacttattgatgattataaggg |
516 |
Q |
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| T |
37163382 |
tgagtagcaatgcacttgctgtcatttcagatttggcagataatgttttggatttgaacgcgacaacagatggacgtcgtcttattgatgattataaggg |
37163283 |
T |
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| Q |
517 |
cgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgatggtttaagtgttggtgttcgaagacttcttcat |
616 |
Q |
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| T |
37163282 |
cgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgatggtttaagtgttggtgttcgaagacttcttcat |
37163183 |
T |
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| Q |
617 |
gtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaatcaatgatgctttgaaacaggttccaaagaaga |
716 |
Q |
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| T |
37163182 |
gtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagtttaagaaaatcaatgatgctttgaaacaggttccaaagaaga |
37163083 |
T |
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| Q |
717 |
accaaaaaccttttgttattcatatca |
743 |
Q |
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| T |
37163082 |
accaaaaaccttttgttattcatatca |
37163056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 308 - 428
Target Start/End: Original strand, 46314705 - 46314825
Alignment:
| Q |
308 |
tggttaagtggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatgaagaatattttaacaactt |
407 |
Q |
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|||||||| ||||| || |||||||||||||| ||||| |||| ||||||||||||||| | |||||| | || |||||||| | |||| ||||| |
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| T |
46314705 |
tggttaagcggtgccatcacataccaagaaacatgtttggatgcttttgagaatactacaaccgatgctggtaaaaaaatgaaagaggttttgcaaactt |
46314804 |
T |
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| Q |
408 |
caatgcatatgagtagcaatg |
428 |
Q |
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| T |
46314805 |
ctatgcatatgagtagcaatg |
46314825 |
T |
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